Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G07
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.021
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.15 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.34 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +2

Query: 515 PPPPPPXXXXPXPLXXXXXXXXXPXPXXXXXPPXXPPXXPXXXPXXPPXXP 667
           PPPPPP    P P                  PP  PP      P  PP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 455 PXXGGXXXXPPXXXXXXXXXPPPPPP 532
           P  GG    PP         PPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 453 SPXXGGXXXXPPXXXXXXXXXPPPPP 530
           +P  GG    PP         PPPPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/51 (25%), Positives = 14/51 (27%)
 Frame = +2

Query: 482 PPXXXXXXXXXPPPPPPXXXXPXPLXXXXXXXXXPXPXXXXXPPXXPPXXP 634
           PP         P P P     P P+         P       PP  PP  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +2

Query: 518 PPPPPXXXXPXPLXXXXXXXXXPXPXXXXXPPXXPPXXPXXXPXXPPXXP 667
           PPP P    P P          P P     P   PP  P      PP  P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
 Frame = +2

Query: 515 PPPPPPXXXXPX--PLXXXXXXXXXPXPXXXXXPPXXPP-XXPXXXPXXPPXXPXXXXFP 685
           PPP  P    P   PL         P P     PP  PP   P   P  P   P     P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 686 P 688
           P
Sbjct: 451 P 451



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 608 PPXXPPXXPXXXPXXPPXXPXXXXFPP 688
           PP  PP  P   P  PP  P     PP
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPP 458


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/58 (29%), Positives = 18/58 (31%)
 Frame = -3

Query: 687 GGKXXXXGXXGGXXGXXXGXXGGXXGGXXXXXGXGXXXXXXXXXRGXGXXXXGGGGGG 514
           GG+    G  GG  G   G  GG  G      G           RG      GG  GG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG---RGGARGGRGGSSGG 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,301
Number of Sequences: 5004
Number of extensions: 18368
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)