Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G05
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   4.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   5.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.5  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect(2) = 4.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 455 PXPPPPXPP 481
           P PPPP PP
Sbjct: 306 PPPPPPPPP 314



 Score = 21.8 bits (44), Expect(2) = 4.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 461 PPPPXPPXRGXF 496
           PPPP PP    F
Sbjct: 307 PPPPPPPPSNDF 318


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 5.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 455 PXPPPPXPP 481
           P PPPP PP
Sbjct: 236 PAPPPPPPP 244



 Score = 21.4 bits (43), Expect(2) = 5.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 446 FSXPXPPPPXP 478
           ++ P PPPP P
Sbjct: 187 YNPPPPPPPPP 197


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 389 GGXXKKKXPPXXRGGGXFFFSXPXPPPPXPP 481
           GG      PP   G G      P PPPP PP
Sbjct: 759 GGPPPPPPPPGVAGAG------PPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,823
Number of Sequences: 5004
Number of extensions: 11389
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)