Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_G05
(924 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0083 + 631196-631675 33 0.42
09_02_0327 - 7284829-7284889,7284946-7286126 27 0.45
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 0.54
07_01_0080 + 587674-588510 31 1.3
12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611... 24 3.6
02_05_0002 - 24849189-24849825,24850267-24850328 29 3.9
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 24 4.5
05_04_0188 - 18883979-18884250,18885046-18885666,18885762-188858... 29 5.2
01_03_0005 + 11568545-11569119,11569179-11569191 29 6.9
09_01_0016 - 376742-376883,377973-378964 25 8.0
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 28 9.1
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565... 28 9.1
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 9.1
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 25 9.7
>01_01_0083 + 631196-631675
Length = 159
Score = 32.7 bits (71), Expect = 0.42
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 389 GGXXKKKXPPXXRGGGXFFFSXPXPPPPXP 478
GG PP GGG F+ P PPPP P
Sbjct: 85 GGYIPYYQPPAGGGGGGGGFNYPAPPPPNP 114
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 27.1 bits (57), Expect(2) = 0.45
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 455 PXPPPPXPPXRG 490
P PPPP PP RG
Sbjct: 58 PPPPPPPPPPRG 69
Score = 24.2 bits (50), Expect(2) = 0.45
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 443 FFSXPXPPPPXPP 481
F + P PPPP PP
Sbjct: 49 FGAHPPPPPPPPP 61
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect(2) = 0.54
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
PP G FS P PPPP PP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPP 572
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
PP R G S P PPPP PP
Sbjct: 698 PPANRTNGPGVPSAPPPPPPPPP 720
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
PP G F P PPPP PP
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPPP 573
Score = 23.4 bits (48), Expect(2) = 9.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 413 PPXXRGGGXFFFSXPXPPPPXP 478
PP G F P PPPP P
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPP 672
Score = 23.0 bits (47), Expect(2) = 9.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 455 PXPPPPXPP 481
P PPPP PP
Sbjct: 691 PPPPPPLPP 699
Score = 20.6 bits (41), Expect(2) = 0.54
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 455 PXPPPPXPPXR 487
P PPPP P R
Sbjct: 605 PPPPPPILPNR 615
>07_01_0080 + 587674-588510
Length = 278
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +2
Query: 392 GXXKKKXPPXXRGGGXFFFSXPXPPPPXPPXRG 490
G PP R GG F P PPPP PP G
Sbjct: 72 GAASTSTPP--RLGGDGMFRRPPPPPPPPPSSG 102
>12_02_0408 +
18659494-18660362,18660472-18660634,18660976-18661139,
18661253-18661511,18661605-18661712
Length = 520
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 449 SXPXPPPPXPP 481
S P PPPP PP
Sbjct: 144 SPPPPPPPPPP 154
Score = 23.8 bits (49), Expect(2) = 3.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 455 PXPPPPXPPXRG 490
P PPP PP RG
Sbjct: 150 PPPPPQAPPARG 161
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 401 KKKXPPXXRGGGXFFFSXPXPPPPXPPXRG 490
KK P GGG P PPPP PP G
Sbjct: 202 KKPQPADTSGGGGH--PHPPPPPPPPPSAG 229
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 24.2 bits (50), Expect(2) = 4.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 449 SXPXPPPPXPP 481
S P PPPP PP
Sbjct: 12 SWPTPPPPPPP 22
Score = 23.4 bits (48), Expect(2) = 4.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 455 PXPPPPXPPXR 487
P PPPP PP +
Sbjct: 18 PPPPPPPPPAK 28
>05_04_0188 -
18883979-18884250,18885046-18885666,18885762-18885887,
18886007-18886265
Length = 425
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 320 APPXKXXWXGGGXGGG 273
+PP K W GGG GGG
Sbjct: 33 SPPHKKLWGGGGGGGG 48
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 480 GGXGGGGXGXEKKKXPPPRXXGG 412
GG GGGG G PPP GG
Sbjct: 78 GGGGGGGGGTVMYTSPPPPYSGG 100
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 25.0 bits (52), Expect(2) = 8.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 443 FFSXPXPPPPXPP 481
F + P PPPP PP
Sbjct: 57 FVAPPPPPPPPPP 69
Score = 21.8 bits (44), Expect(2) = 8.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 455 PXPPPPXPPXRG 490
P PPPP P G
Sbjct: 63 PPPPPPPPQQNG 74
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 431 GGXFFFSXPXPPPPXPPXRG 490
GG + P PPPP PP +G
Sbjct: 93 GGGGWVQLPPPPPPPPPPQG 112
>03_05_0781 +
27654764-27655429,27655902-27656004,27656535-27656590,
27656895-27657059,27657078-27657083,27657657-27657770,
27658170-27658262
Length = 400
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 407 KXPPXXRGGGXFFFSXPXPPPPXPPXRG 490
+ P RGG F P PPPP P RG
Sbjct: 22 RRPVQPRGG--IFLLKPPPPPPFPSRRG 47
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 480 GGXGGGGXGXEKKKXPPPRXXGGXFFF 400
GG G GG G E+ PPP+ FF
Sbjct: 167 GGVGAGGGGGEEPMYPPPKLGQFYEFF 193
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 25.0 bits (52), Expect(2) = 9.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
PP F + P PPPP PP
Sbjct: 332 PPPPPPPSRFNNTTPKPPPPPPP 354
Score = 21.4 bits (43), Expect(2) = 9.7
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 455 PXPPPPXPPXRG 490
P PPPP P G
Sbjct: 349 PPPPPPPEPPTG 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,448,845
Number of Sequences: 37544
Number of extensions: 247252
Number of successful extensions: 4368
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3846
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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