Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G05
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    25   1.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    25   1.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    25   1.8  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    26   3.1  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    26   3.2  
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 25.0 bits (52), Expect(2) = 1.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
           PP    GG    S   PPPP PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPP 765



 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 461 PPPPXPPXRGXF 496
           PPPP PP  G F
Sbjct: 769 PPPPPPPPPGGF 780


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 25.0 bits (52), Expect(2) = 1.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
           PP    GG    S   PPPP PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPP 765



 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 461 PPPPXPPXRGXF 496
           PPPP PP  G F
Sbjct: 769 PPPPPPPPPGGF 780


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 25.0 bits (52), Expect(2) = 1.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
           PP    GG    S   PPPP PP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPP 348



 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 461 PPPPXPPXRGXF 496
           PPPP PP  G F
Sbjct: 352 PPPPPPPPPGGF 363


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 25.8 bits (54), Expect(2) = 3.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
           PP   G      + P PPPP PP
Sbjct: 616 PPQSFGMAPISSAAPPPPPPPPP 638



 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 461 PPPPXPPXRG 490
           PPPP PP  G
Sbjct: 650 PPPPPPPPSG 659


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 25.8 bits (54), Expect(2) = 3.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
           PP   G      + P PPPP PP
Sbjct: 442 PPQSFGMAPISSAAPPPPPPPPP 464



 Score = 22.2 bits (45), Expect(2) = 3.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 461 PPPPXPPXRG 490
           PPPP PP  G
Sbjct: 476 PPPPPPPPSG 485


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 392 GXXKKKXPPXXRGGGXFFFSXPXPPPPXPPXRG 490
           G  +   PP   G G    S P PPPP P   G
Sbjct: 513 GNGRPMKPPSSSGSGSNRRSGPPPPPPPPRSSG 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,898,225
Number of Sequences: 27780
Number of extensions: 135209
Number of successful extensions: 1469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)