Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_G05
(924 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33660.1 68417.m04781 expressed protein 27 0.48
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family... 25 0.81
At1g61750.1 68414.m06964 expressed protein contains Pfam profile... 25 0.84
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 25 1.3
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 25 1.8
At4g14750.1 68417.m02270 calmodulin-binding family protein conta... 24 2.4
At1g70470.1 68414.m08108 expressed protein 29 5.8
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 24 9.4
>At4g33660.1 68417.m04781 expressed protein
Length = 76
Score = 27.1 bits (57), Expect(2) = 0.48
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
PP G ++ P PPPP PP
Sbjct: 20 PPPPVGVPPQYYPPPPPPPPPPP 42
Score = 24.2 bits (50), Expect(2) = 0.48
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 455 PXPPPPXPPXRGXF 496
P PPPP PP + F
Sbjct: 36 PPPPPPPPPRKVGF 49
>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 561
Score = 25.4 bits (53), Expect(2) = 0.81
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 446 FSXPXPPPPXPP 481
+S P PPPP PP
Sbjct: 363 YSPPPPPPPPPP 374
Score = 24.6 bits (51), Expect(2) = 0.81
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 455 PXPPPPXPPXR 487
P PPPP PP R
Sbjct: 395 PPPPPPPPPER 405
>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
PF01657 domain of unknown function
Length = 352
Score = 25.4 bits (53), Expect(2) = 0.84
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 443 FFSXPXPPPPXPP 481
F + P PPPP PP
Sbjct: 244 FLAPPPPPPPPPP 256
Score = 24.6 bits (51), Expect(2) = 0.84
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 455 PXPPPPXPPXR 487
P PPPP PP R
Sbjct: 253 PPPPPPPPPQR 263
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 24.6 bits (51), Expect(2) = 1.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 413 PPXXRGGGXFFFSXPXPPPPXPP 481
PP G + P PPPP PP
Sbjct: 625 PPSFGSTGNKRQAQPPPPPPPPP 647
Score = 24.6 bits (51), Expect(2) = 1.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 455 PXPPPPXPPXR 487
P PPPP PP R
Sbjct: 640 PPPPPPPPPTR 650
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 24.6 bits (51), Expect(2) = 1.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 455 PXPPPPXPPXR 487
P PPPP PP R
Sbjct: 387 PPPPPPPPPLR 397
Score = 24.2 bits (50), Expect(2) = 1.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 449 SXPXPPPPXPP 481
S P PPPP PP
Sbjct: 384 SPPPPPPPPPP 394
>At4g14750.1 68417.m02270 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 387
Score = 24.2 bits (50), Expect(2) = 2.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 449 SXPXPPPPXPP 481
S P PPPP PP
Sbjct: 66 SPPPPPPPPPP 76
Score = 24.2 bits (50), Expect(2) = 2.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 455 PXPPPPXPPXRGXF 496
P PPPP PP + F
Sbjct: 70 PPPPPPPPPLQQPF 83
>At1g70470.1 68414.m08108 expressed protein
Length = 154
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 480 GGXGGGGXGXEKKKXPPP 427
GG GGGG G + K PPP
Sbjct: 134 GGGGGGGGGGKGGKRPPP 151
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 24.2 bits (50), Expect(2) = 9.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 449 SXPXPPPPXPP 481
S P PPPP PP
Sbjct: 41 SPPPPPPPPPP 51
Score = 22.2 bits (45), Expect(2) = 9.4
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 461 PPPPXPPXR 487
PPPP PP R
Sbjct: 91 PPPPQPPPR 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,418,916
Number of Sequences: 28952
Number of extensions: 130498
Number of successful extensions: 2313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2062
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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