Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G04
         (873 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.4  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   5.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 435 WNKLTXPATPSCSPKPGMRVPVRLSPCP 352
           W     P+  + SP+P   +PV   P P
Sbjct: 67  WQVTPLPSDGTTSPEPDPEIPVAPEPAP 94


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 502  TRPTSTRWAAEWTT 543
            TRPT+T W  + TT
Sbjct: 1072 TRPTTTNWPTQGTT 1085


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 812 NPYVRIXKGXYDFTAFA*YF*KNFEKENPTLG 717
           N Y+    G  DF   A +   ++ K+N TLG
Sbjct: 154 NTYILALDGDIDFQPEALHLLVDYMKKNKTLG 185


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 812 NPYVRIXKGXYDFTAFA*YF*KNFEKENPTLG 717
           N Y+    G  DF   A +   ++ K+N TLG
Sbjct: 468 NTYILALDGDIDFQPEALHLLVDYMKKNKTLG 499


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 812 NPYVRIXKGXYDFTAFA*YF*KNFEKENPTLG 717
           N Y+    G  DF   A +   ++ K+N TLG
Sbjct: 701 NTYILALDGDIDFQPEALHLLVDYMKKNKTLG 732


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 812 NPYVRIXKGXYDFTAFA*YF*KNFEKENPTLG 717
           N Y+    G  DF   A +   ++ K+N TLG
Sbjct: 701 NTYILALDGDIDFQPEALHLLVDYMKKNKTLG 732


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 323 EAALSLWRSLKSADPMALSTF 261
           E  L+ W+  KSA+ +A+  F
Sbjct: 372 EVNLTCWQDTKSANKIAMKLF 392


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 480 NSPSAIPNAPNFNTLGGG 533
           N+PSA  N  NFN    G
Sbjct: 130 NTPSATNNNTNFNNNSNG 147


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 778 ILLLSHNTFRRISRRRI 728
           ILLL  +TFR IS R I
Sbjct: 358 ILLLVSSTFRTISGRTI 374


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 480 NSPSAIPNAPNFNTLGGG 533
           N+PSA  N  NFN    G
Sbjct: 78  NTPSATNNNTNFNNNSNG 95


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 480 NSPSAIPNAPNFNTLGGG 533
           N+PSA  N  NFN    G
Sbjct: 261 NTPSATNNNTNFNNNSNG 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,889
Number of Sequences: 336
Number of extensions: 2692
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)