Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G04
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03230.1 68416.m00319 esterase/lipase/thioesterase family pro...    29   5.4  
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    28   7.1  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    28   7.1  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    28   7.1  
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    28   7.1  
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end...    28   9.4  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    28   9.4  

>At3g03230.1 68416.m00319 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 333

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 431 FHNNNHDLSAKGVRDQELAQRHSQRAQLQHAGRRSGLHVQTE 556
           F N+ +       RD ELA++H++ + ++ +  R G +V T+
Sbjct: 208 FPNSRNPKDTMTERDLELAEKHTKHSYIKESALRQGGYVTTQ 249


>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 290 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 153
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 290 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 153
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 290 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 153
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +2

Query: 329 GLALDNVNGHGLSLTGTRIPGFGEQLGVAGXVNLFHNNNHDLSAKGVRDQELAQRHSQRA 508
           G  + +  GHG+   G    G   Q    G   + H   H +  + +   +   RH  + 
Sbjct: 165 GHGMQHQGGHGMQHQGMH--GMQHQ----GGHGMEHQGGHGMQHQDMHGMQHQGRHGMQH 218

Query: 509 QLQHAGRRSGLH-VQTEGG-RIVERG 580
           Q  H  +  G+H +Q +GG RI  +G
Sbjct: 219 QGGHEMQHQGMHGMQHQGGHRIQHQG 244


>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291 A short intron was annotated between exons
           4 and 5 to circumvent a frameshift.   The frameshift may
           be artificial due to a sequencing error, or
           alternatively is genuine suggesting a truncated protein
           or pseudogene.
          Length = 495

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 711 RRSVKRRIKLLEAGXXXRASWTEIGTGSAYPRPSSHSG**RQSAPRSTMRPPSV*TCS 538
           RR  KR++  +      + S+  IG G+ YPR   H G    S+P  T  P  V  CS
Sbjct: 381 RRLAKRQVDYILGDNPMKMSYM-IGYGNRYPRQIHHRG---ASSPSITTHPTPV-KCS 433


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 659 ERAGRRSEQVQLTP-GXXXXXXXXXXXXRAQRCAHLLFEHVVHSAAQRVEVGRVGNGAGR 483
           ++AG R   VQL P G              +   H L ++++    +   VG+ GN    
Sbjct: 602 QKAGERESTVQLKPCGTPLLSSASCGDALTKGKIHCLVQNMLSPFRREESVGKKGNSDSS 661

Query: 482 VPDR 471
           +P+R
Sbjct: 662 IPER 665


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,648,790
Number of Sequences: 28952
Number of extensions: 270380
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)