Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_G03
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 38 0.014
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 32 0.70
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266 31 0.93
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 31 0.93
02_04_0103 - 19768288-19768737 30 2.1
02_01_0475 + 3422629-3422695,3422960-3423216 30 2.1
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 30 2.8
07_01_0463 + 3502708-3503535 29 3.8
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 37.5 bits (83), Expect = 0.014
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK +K +KKK KK KK+
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTK 429
KKKKKKK KK K KK +K +KKK + K +
Sbjct: 77 KKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKAQ 115
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -3
Query: 383 SXXXFFFXXFPXXFXFXFFFFFFF 312
S FFF F F F FFFFFFF
Sbjct: 58 SKEDFFFFFFFFFFFFFFFFFFFF 81
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -3
Query: 386 FSXXXFFFXXFPXXFXFXFFFFFFF 312
F FFF F F F FFFFFFF
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFFFF 86
>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
Length = 60
Score = 31.5 bits (68), Expect = 0.93
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 295 GGXXX*KKKKKKKXXKKXXGKXXKKXXXXEKXEKKK 402
GG KKKKKK KK K KK +K +KKK
Sbjct: 21 GGLRGLPKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 56
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -3
Query: 371 FFFXXFPXXFXFXFFFFFFF 312
FFF F F F FFFFFFF
Sbjct: 87 FFFFFFFFFFFFFFFFFFFF 106
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -3
Query: 371 FFFXXFPXXFXFXFFFFFFF 312
FFF F F F FFFFFFF
Sbjct: 88 FFFFFFFFFFFFFFFFFFFF 107
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -3
Query: 371 FFFXXFPXXFXFXFFFFFFF 312
FFF F F F FFFFFFF
Sbjct: 89 FFFFFFFFFFFFFFFFFFFF 108
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 386 FSXXXFFFXXFPXXFXFXFFFFFF 315
++ FFF F F F FFFFFF
Sbjct: 85 YAFFFFFFFFFFFFFFFFFFFFFF 108
>02_04_0103 - 19768288-19768737
Length = 149
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKK 423
K+K+KKK KK K KK +K +KKK A K
Sbjct: 109 KRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKGMEADK 145
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
K+++K+K +K K KK +K +KKK KK KKK
Sbjct: 103 KRRRKRKRKRKKKKKKKKKKKKKKKKKKKK----KKKKKKK 139
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXA 417
KKKKKKK KK K KK +K +KK A
Sbjct: 43 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKLSSA 77
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXF 408
K+KKKKK KK K KK +K +KK F
Sbjct: 371 KRKKKKKKKKKKKKKKKKKKKKKKKKKKKLRF 402
>07_01_0463 + 3502708-3503535
Length = 275
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXE--KXEKKKXFXXAKKTKKKXXXK 447
K+KKK K KK GK K E K EKKK +K KK K
Sbjct: 110 KEKKKDKSDKKEEGKKKKDGDEEEGKKKEKKKDKDGDEKEGKKEKKK 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,010,690
Number of Sequences: 37544
Number of extensions: 50301
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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