Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_G03
(886 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 30 2.9
>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK +K +KKK KK KKK
Sbjct: 149 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 189
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK +K +KKK KK KKK
Sbjct: 150 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 190
Score = 37.1 bits (82), Expect = 0.019
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK +K +KKK KK KK+
Sbjct: 151 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKE 191
Score = 35.5 bits (78), Expect = 0.058
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK +K +KKK KK K++
Sbjct: 152 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEE 192
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK E+ E+++ +K +K+
Sbjct: 168 KKKKKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKE 208
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK E+ E+++ K+ K++
Sbjct: 169 KKKKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKEE 209
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK +K E+++ ++ +K+
Sbjct: 165 KKKKKKKKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKE 205
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK +K E+++ ++ K++
Sbjct: 166 KKKKKKKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEE 206
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK E+ E+++ +K +++
Sbjct: 171 KKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKEEEE 211
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KKKKKKK KK K KK E+ E+++ K+ +++
Sbjct: 172 KKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKEEEEE 212
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 33.1 bits (72), Expect = 0.31
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
KK+KKKK KK K KK +K +K K KK KK
Sbjct: 17 KKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKK 57
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
+KK+KKK KK K KK K KK KK K K
Sbjct: 16 EKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMK 56
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
+KKKK+K KK K KK K K K K KKK
Sbjct: 19 RKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKKK 59
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKK 435
K+KKKK+ KK K KK + + K KK KKK
Sbjct: 18 KRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKK 58
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKKXXXK 447
+KKKKKK KK K K K +KKK K+ + + K
Sbjct: 24 QKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKKKEEEAEVGEK 68
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKKXXXK 447
+++KK+K K+ K KK +K +K K K KKK K
Sbjct: 14 REEKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKK 58
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +1
Query: 313 KKKKKKKXXKKXXGKXXKKXXXXEKXEKKKXFXXAKKTKKKXXXK 447
KKK KK KK K KK + +K AKKT KK K
Sbjct: 593 KKKAAKKPAKKSTPKKAKKPAAKKSPKKLSKKPAAKKTPKKVAKK 637
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,669,185
Number of Sequences: 59808
Number of extensions: 28635
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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