Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G02
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_40600| Best HMM Match : DUF667 (HMM E-Value=0.35)                   29   6.6  
SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)                    28   8.7  

>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 262 GNCLKGLVDLNVLKNEIEE 318
           GNCLKG+V++NV  N IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


>SB_40600| Best HMM Match : DUF667 (HMM E-Value=0.35)
          Length = 449

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -1

Query: 365 SQYFL-KTSSSAPFGLASSISF---FRTFKSTSPLRQFPKVRNAASTXRDFVFS 216
           ++YF+     S   GLA  +SF   F+ FKSTS   QFP V N +    + V S
Sbjct: 379 TKYFVVHLDVSTEDGLAVRVSFSNLFKEFKSTSTWLQFPFVSNPSPNSVEAVTS 432


>SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 496 YKDGDRIALFIAEGGPECFQQKTENLKTCFLNLKQSFPTVESANNLS 636
           Y  G +I  F+A+   +C  + TENL+    N +    T E+A  LS
Sbjct: 46  YLHGFKIESFVAQNPFDCSIKCTENLRCQSFNYQSESSTSENACELS 92


>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
          Length = 822

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 326 GLASSISF---FRTFKSTSPLRQFPKVRNAASTXRDFVFS 216
           GLA  +SF   F+ FKSTS   QFP V N +    + V S
Sbjct: 61  GLAVRVSFSNLFKEFKSTSTWLQFPFVSNPSPNSVEAVTS 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,199,367
Number of Sequences: 59808
Number of extensions: 401348
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)