Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G02
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   4.1  
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa...    29   5.4  
At5g28550.1 68418.m03483 hypothetical protein                          29   5.4  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 658 FCAFFKQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRL 533
           F +F K+     ++ +WG S  +    S  S+SF G + GRL
Sbjct: 435 FSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRSFYGGSPGRL 476


>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 396

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 337 LDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNS 468
           LD  F+    +  +  G I  +LQG+R  + +EY +  N+  NS
Sbjct: 136 LDREFESILRRRRRSSGNILQLLQGIRAGIASEYESSDNNWDNS 179


>At5g28550.1 68418.m03483 hypothetical protein
          Length = 286

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 217 LKTKSLXVEAALRTFGNCLKGLVDLNVLKNEI-EEAKPNGALDEVFKKYCDKSA 375
           L+  S+  +  +RT   C++ L  + V K+++ E+  P  A+ +   + C KSA
Sbjct: 152 LEKASMVFKLCIRTVWTCVRLLCQIYVNKSDLSEDCLPKEAIIDFVSEACSKSA 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,802
Number of Sequences: 28952
Number of extensions: 275558
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)