Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G01
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   111   1e-25
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   1.1  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  111 bits (267), Expect = 1e-25
 Identities = 54/108 (50%), Positives = 62/108 (57%)
 Frame = +1

Query: 268 GFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSRIXLVDDQ 447
           GFH+H  G  + GC S G HFNPE K HG      RHVG LGN+  D     +    D  
Sbjct: 45  GFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSV 104

Query: 448 ISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVACGVIGI 591
           ISL G + IIGR +V+H   DD GK    +S KTG AG R ACGVIGI
Sbjct: 105 ISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 361  NDVNRHVGXLGNVVFDENHYSRIXLVDDQISLSGPHGIIG 480
            ND   H G LG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,406
Number of Sequences: 5004
Number of extensions: 28746
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)