Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G01
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527...   147   1e-35
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226...   145   4e-35
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261...   140   1e-33
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624...   120   1e-27
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494...    37   0.023
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173...    33   0.38 
11_06_0683 + 26259129-26259968                                         29   3.5  
09_06_0081 + 20745627-20748144,20748211-20748308                       29   4.7  
01_06_1098 + 34518608-34519546                                         29   6.2  

>03_02_1006 +
           13150394-13150450,13150787-13150899,13152538-13152709,
           13153791-13153878,13153971-13154072,13154197-13154292,
           13154547-13154578,13154727-13154802,13155264-13155317,
           13155431-13155453
          Length = 270

 Score =  147 bits (356), Expect = 1e-35
 Identities = 67/125 (53%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
 Frame = +1

Query: 220 GPRFXXGX-TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGN 396
           GP    G  +GL PG +GFH+H  G  + GC+STG H+NP  K+HG P D  RH G LGN
Sbjct: 144 GPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGN 203

Query: 397 VVFDENHYSRIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVAC 576
           V   E+  + I +VD QI L+GP+ IIGRAVV+H   DD GK  H  S+ TG AGGRVAC
Sbjct: 204 VTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 263

Query: 577 GVIGI 591
           G+IG+
Sbjct: 264 GIIGL 268


>07_03_1599 -
           28022196-28022218,28022355-28022408,28022545-28022620,
           28022727-28022758,28022921-28023016,28023105-28023206,
           28023291-28023366
          Length = 152

 Score =  145 bits (351), Expect = 4e-35
 Identities = 66/125 (52%), Positives = 81/125 (64%), Gaps = 1/125 (0%)
 Frame = +1

Query: 220 GPRFXXGX-TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGN 396
           GP    G  +GL PG +GFHVH  G  + GC+STG HFNP  K+HG P D NRH G LGN
Sbjct: 26  GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGN 85

Query: 397 VVFDENHYSRIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVAC 576
           +    +  + + + D QI L+G H IIGRAVV+H   DD GK  H  S+ TG AGGRVAC
Sbjct: 86  ITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145

Query: 577 GVIGI 591
           G+IG+
Sbjct: 146 GIIGL 150


>08_02_1596 +
           28125331-28125556,28125986-28126047,28126160-28126199,
           28126934-28127029,28127138-28127169,28127274-28127349,
           28127430-28127483,28127916-28127941
          Length = 203

 Score =  140 bits (340), Expect = 1e-33
 Identities = 61/116 (52%), Positives = 77/116 (66%)
 Frame = +1

Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
           TGL PG +GFH+H  G  + GC+STG HFNP +  HG P D  RH G LGN+V +    +
Sbjct: 85  TGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVA 144

Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVACGVIGI 591
              +VD QI LSGP+ ++GRA V+HE  DD GK  H  S  TG AGGR+ACGV+G+
Sbjct: 145 EATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 200


>03_02_0185 -
           6239421-6239480,6239971-6240024,6240523-6240578,
           6241108-6241183,6241276-6241307,6241421-6241516,
           6242498-6242599,6242728-6242833
          Length = 193

 Score =  120 bits (289), Expect = 1e-27
 Identities = 52/93 (55%), Positives = 67/93 (72%)
 Frame = +1

Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
           TGL PG +GFH+H  G  + GC STG HFNP +K HG P+D  RHVG LGN+V +++  +
Sbjct: 45  TGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGVA 104

Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKADDYGK 522
            I + D QISLSGPH I+GRAVV+H  +DD G+
Sbjct: 105 DIFIKDLQISLSGPHSILGRAVVVHADSDDLGR 137


>04_04_0863 +
           28847761-28848009,28848108-28848131,28849388-28849460,
           28849550-28849684,28850191-28850411,28851747-28851983
          Length = 312

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 24/89 (26%), Positives = 45/89 (50%)
 Frame = +1

Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
           +GL PG +G+ ++  G L+ G  STG  +NP   D+      N+ +G LG +   E   +
Sbjct: 197 SGLSPGKHGWSINEFGDLTRGAESTGKVYNP--SDYRS----NKPLGDLGTLEAGEKGEA 250

Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKAD 510
           +     +++ +     +IGR++ L+   D
Sbjct: 251 QFSASKEKLKVV---DLIGRSIALYATED 276


>03_06_0167 -
           32115770-32115886,32116388-32117102,32117178-32117383,
           32118094-32118138,32119047-32119109,32119726-32119749,
           32120673-32120772,32120814-32120907,32121036-32121074,
           32121605-32121668
          Length = 488

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTG 321
           +GL P  +GFHVH  G  + GC+  G
Sbjct: 44  SGLKPVLHGFHVHALGGTTNGCMRNG 69


>11_06_0683 + 26259129-26259968
          Length = 279

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 253 PPGXYGFHVHXXGXLSGGC-VSTGSHFNPEH 342
           PP  YG+H+H      G C  + G H++P +
Sbjct: 224 PPPCYGYHLHYCHCTHGHCHCAGGRHYSPSY 254


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 578 PQATRPPAXPVFLESGWSLLP*SSAFSWSTTALPMXPCGP 459
           P+A+  PA PV    GW++ P ++ +S+S +        P
Sbjct: 591 PRASSAPAPPVAAPRGWTVSPTTARYSFSDSGASSSSAAP 630


>01_06_1098 + 34518608-34519546
          Length = 312

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = +3

Query: 3   VXLCXPLGPSXILCFSAGRPRSPXXACFX-SPSWLXS-LWRRLXTASPRRLAPLPFSPQX 176
           V L   L  S  + +   +PR P       + S L   L     TA+P   AP+ FSP+ 
Sbjct: 120 VLLAAALAASAAVVYLVFKPRQPDYTLLSLAVSGLGGILGNASSTAAP---APVSFSPEF 176

Query: 177 RXAAXSRSPXFXLGXSXXXGGXHWAAS 257
                + +P   +G     GG H A S
Sbjct: 177 DATVRADNPNGKIGVHYEGGGSHVAVS 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,418,465
Number of Sequences: 37544
Number of extensions: 256693
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)