Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_G01
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 128 7e-30
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 126 3e-29
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 126 3e-29
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 118 7e-27
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 118 7e-27
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 118 7e-27
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 118 7e-27
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 107 7e-24
Z93383-10|CAB07632.1| 286|Caenorhabditis elegans Hypothetical p... 28 7.3
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 128 bits (308), Expect = 7e-30
Identities = 56/117 (47%), Positives = 74/117 (63%)
Frame = +1
Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
+GL G +GFH+H G GC+S G H+NP HG P+D NRH+G LGN+ + +
Sbjct: 60 SGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDT 119
Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVACGVIGIL 594
I + D SLSG + IIGR+VV+HEK DD G+ S+ TG AG R+ACG IGI+
Sbjct: 120 LISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGIV 176
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 126 bits (303), Expect = 3e-29
Identities = 55/115 (47%), Positives = 72/115 (62%)
Frame = +1
Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
+GL G +GFH+H G GC+S G H+NP HG P+D NRH+G LGN+ + +
Sbjct: 60 SGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDT 119
Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVACGVIG 588
I + D SLSG + IIGR+VV+HEK DD G+ S+ TG AG R+ACG IG
Sbjct: 120 LISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 126 bits (303), Expect = 3e-29
Identities = 55/115 (47%), Positives = 72/115 (62%)
Frame = +1
Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
+GL G +GFH+H G GC+S G H+NP HG P+D NRH+G LGN+ + +
Sbjct: 60 SGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDT 119
Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVACGVIG 588
I + D SLSG + IIGR+VV+HEK DD G+ S+ TG AG R+ACG IG
Sbjct: 120 LISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 118 bits (283), Expect = 7e-27
Identities = 55/118 (46%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Frame = +1
Query: 247 GLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSR 426
GL PG +GFHVH G + GC+S G HFNP K HG P RHVG LGNV + ++
Sbjct: 37 GLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAK 96
Query: 427 IXLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGXAGGRVACGVIGI 591
I L D ++L GP+ ++GR++V+H DD G+ +S+KTG AG R ACGVI +
Sbjct: 97 IKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 118 bits (283), Expect = 7e-27
Identities = 55/118 (46%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Frame = +1
Query: 247 GLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSR 426
GL PG +GFHVH G + GC+S G HFNP K HG P RHVG LGNV + ++
Sbjct: 37 GLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAK 96
Query: 427 IXLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGXAGGRVACGVIGI 591
I L D ++L GP+ ++GR++V+H DD G+ +S+KTG AG R ACGVI +
Sbjct: 97 IKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 118 bits (283), Expect = 7e-27
Identities = 55/118 (46%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Frame = +1
Query: 247 GLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSR 426
GL PG +GFHVH G + GC+S G HFNP K HG P RHVG LGNV + ++
Sbjct: 37 GLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAK 96
Query: 427 IXLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGXAGGRVACGVIGI 591
I L D ++L GP+ ++GR++V+H DD G+ +S+KTG AG R ACGVI +
Sbjct: 97 IKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 118 bits (283), Expect = 7e-27
Identities = 55/118 (46%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Frame = +1
Query: 247 GLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSR 426
GL PG +GFHVH G + GC+S G HFNP K HG P RHVG LGNV + ++
Sbjct: 59 GLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAK 118
Query: 427 IXLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGXAGGRVACGVIGI 591
I L D ++L GP+ ++GR++V+H DD G+ +S+KTG AG R ACGVI +
Sbjct: 119 IKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 107 bits (258), Expect = 7e-24
Identities = 53/118 (44%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Frame = +1
Query: 247 GLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSR 426
GL PG +GFH+H G + GC S G HFNP +HG + V RHVG LGNV + ++
Sbjct: 57 GLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGGRDSVVRHVGDLGNVEAGADGVAK 116
Query: 427 IXLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGXAGGRVACGVIGI 591
I D +SL G + +IGR++V+H DD G+ +S KTG AG R ACGVI +
Sbjct: 117 IKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGNAGARAACGVIAL 174
>Z93383-10|CAB07632.1| 286|Caenorhabditis elegans Hypothetical
protein F54B8.11 protein.
Length = 286
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 558 WRSSRLR-CHRNSIDLQISXLLVLFNTIYIFF 650
W++S+ R C I L S +L+LFN I IFF
Sbjct: 197 WKNSKQRFCKVTQIALLDSLILLLFNIIPIFF 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,450
Number of Sequences: 27780
Number of extensions: 187490
Number of successful extensions: 359
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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