Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G01
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.2  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 433 LVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRK 546
           ++D+ I LSG     G  V+LH       + +  D++K
Sbjct: 401 ILDEPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKK 438


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 322 SHFNPEHKDHGHPNDVNRHV 381
           S F+ + KD G PND N ++
Sbjct: 345 SSFDFQSKDQGPPNDGNGNI 364


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 600 LQISXLLVLFNTIYIFF 650
           +QI  L VLFNT++I +
Sbjct: 4   MQILTLGVLFNTLHIIY 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,005
Number of Sequences: 438
Number of extensions: 2206
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)