Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G01
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...   143   2e-34
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...   138   4e-33
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...   136   2e-32
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    43   2e-04
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa...    32   0.55 

>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score =  143 bits (346), Expect = 2e-34
 Identities = 62/116 (53%), Positives = 78/116 (67%)
 Frame = +1

Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
           +GL PG +GFHVH  G  + GC+STG HFNP+ K HG P D NRH G LGN+   ++  +
Sbjct: 35  SGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTA 94

Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVACGVIGI 591
              + D QI L+GP+ I+GRAVV+H   DD GK  H  S  TG AGGRVACG+IG+
Sbjct: 95  TFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150


>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score =  138 bits (334), Expect = 4e-33
 Identities = 60/116 (51%), Positives = 78/116 (67%)
 Frame = +1

Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
           TGL PG +GFH+H  G  + GC+STG HFNP +  HG P D  RH G LGN+  + +  +
Sbjct: 98  TGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVA 157

Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVACGVIGI 591
              +VD+QI L+GP+ ++GRA V+HE  DD GK  H  S  TG AGGR+ACGVIG+
Sbjct: 158 ETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score =  136 bits (328), Expect = 2e-32
 Identities = 58/116 (50%), Positives = 76/116 (65%)
 Frame = +1

Query: 244 TGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYS 423
           +GL PG +GFH+H  G  + GC+STG HFNP ++ HG PN+  RH G LGN++   N  +
Sbjct: 41  SGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVA 100

Query: 424 RIXLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGXAGGRVACGVIGI 591
            I + D  I LSG + I+GRAVV+H   DD GK  H  S+ TG AG RV CG+IG+
Sbjct: 101 EILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 30/96 (31%), Positives = 48/96 (50%)
 Frame = +1

Query: 226 RFXXGXTGLPPGXYGFHVHXXGXLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVF 405
           R     TGL PG + + ++  G L+ G  STGS +NP     G        +G LG +  
Sbjct: 122 RIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG-----TEPLGDLGTLEA 176

Query: 406 DENHYSRIXLVDDQISLSGPHGIIGRAVVLHEKADD 513
           D+N  +      +++ ++    +IGRAVV++ K DD
Sbjct: 177 DKNGEAFYSGKKEKLKVA---DLIGRAVVVY-KTDD 208


>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 226

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
 Frame = +1

Query: 247 GLPPGXYGFHVHXX--GXLSGGCVSTG---SHFNPEHKDHGHPNDVNRHVGXLGNVVFDE 411
           GL P  +  H H      + G   S G      NP H  H H +   RH G  G     +
Sbjct: 149 GLIPSLFNLHFHGFPDAAMYGAAASGGFPHGFSNPFHGGHSHMHSYQRHTGRQG----QQ 204

Query: 412 NHYSRIXLV 438
           +H+ RI L+
Sbjct: 205 DHHLRILLL 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,957
Number of Sequences: 28952
Number of extensions: 175925
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)