Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F24
         (935 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15; ...    69   1e-10
UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative; ...    47   8e-04
UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;...    44   0.004
UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1; A...    40   0.069
UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1; ...    39   0.21 
UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma j...    37   0.64 
UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative; ...    37   0.85 

>UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15;
           Eukaryota|Rep: 60S acidic ribosomal protein P1 -
           Drosophila melanogaster (Fruit fly)
          Length = 112

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 37/74 (50%), Positives = 38/74 (51%)
 Frame = +1

Query: 160 MVLKXELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXF 339
           M  K EL CV      VDDDV V GEKI  ILK   V+VE YW G   K LEG NV    
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 340 INXGXGVGXXXXXG 381
            N G GVG     G
Sbjct: 61  TNIGSGVGAAPAGG 74


>UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative;
           n=2; Aedes aegypti|Rep: Acidic ribosomal protein P1,
           putative - Aedes aegypti (Yellowfever mosquito)
          Length = 106

 Score = 46.8 bits (106), Expect = 8e-04
 Identities = 26/59 (44%), Positives = 27/59 (45%)
 Frame = +1

Query: 184 CVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGXGV 360
           C        DDDV V  EKI  I     VD+E YW G   K LEG NV     N G GV
Sbjct: 19  CAYSALILFDDDVAVTDEKISTI--QANVDIEPYWPGLFTKALEGINVKDLITNIGSGV 75


>UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;
           Eukaryota|Rep: 60S acidic ribosomal protein P1 - Homo
           sapiens (Human)
          Length = 114

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C+       DD+V V  +KI  ++K   V+VE +W G   K L   N+     N G 
Sbjct: 6   ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65

Query: 355 G 357
           G
Sbjct: 66  G 66


>UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1;
           Arabidopsis thaliana|Rep: 60s acidic ribosomal protein
           P1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 111

 Score = 40.3 bits (90), Expect = 0.069
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C        DD + +  E I  ++K   V+VE YW     K  E  N+    +N G 
Sbjct: 5   ELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGA 64

Query: 355 G 357
           G
Sbjct: 65  G 65


>UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 88

 Score = 38.7 bits (86), Expect = 0.21
 Identities = 22/46 (47%), Positives = 23/46 (50%)
 Frame = +1

Query: 214 DDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXG 351
           DDV V  EKI  ILK    +VE YW     K LEG NV     N G
Sbjct: 44  DDVAVTDEKISTILKA--ANVEPYWRALFAKALEGINVKDLITNIG 87


>UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09468 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 116

 Score = 37.1 bits (82), Expect = 0.64
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 169 KXELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVD-VEXYWXGXXXKXLEGXNVXXXFIN 345
           K EL CV       DDD+ V  +KI  ILK   +  VE Y        L G NV    ++
Sbjct: 3   KSELACVYAALMLADDDIDVTADKINTILKAANIKFVESYLPNLFATSLNGKNVKDLLMS 62

Query: 346 XG 351
            G
Sbjct: 63  MG 64


>UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative;
           n=1; Aedes aegypti|Rep: Acidic ribosomal protein P1,
           putative - Aedes aegypti (Yellowfever mosquito)
          Length = 88

 Score = 36.7 bits (81), Expect = 0.85
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +1

Query: 268 VDVEXYWXGXXXKXLEGXNVXXXFINXGXGVG 363
           VD+E YW     K LEG NV     N G GVG
Sbjct: 8   VDIEPYWPALFAKALEGINVKDLITNIGSGVG 39


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,116,017
Number of Sequences: 1657284
Number of extensions: 1106909
Number of successful extensions: 388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)