Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F24
         (935 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    44   6e-04
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                44   6e-04
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    44   6e-04
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    44   6e-04
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    44   6e-04
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    44   6e-04
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                38   0.052

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C+       DD+V V  +KI  ++K   V+VE +W G   K L   N+     N G 
Sbjct: 6   ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65

Query: 355 G 357
           G
Sbjct: 66  G 66


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C+       DD+V V  +KI  ++K   V+VE +W G   K L   N+     N G 
Sbjct: 6   ELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65

Query: 355 G 357
           G
Sbjct: 66  G 66


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C+       DD+V V  +KI  ++K   V+VE +W G   K L   N+     N G 
Sbjct: 6   ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65

Query: 355 G 357
           G
Sbjct: 66  G 66


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C+       DD+V V  +KI  ++K   V+VE +W G   K L   N+     N G 
Sbjct: 6   ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65

Query: 355 G 357
           G
Sbjct: 66  G 66


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C+       DD+V V  +KI  ++K   V+VE +W G   K L   N+     N G 
Sbjct: 6   ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65

Query: 355 G 357
           G
Sbjct: 66  G 66


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C+       DD+V V  +KI  ++K   V+VE +W G   K L   N+     N G 
Sbjct: 6   ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65

Query: 355 G 357
           G
Sbjct: 66  G 66


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 37.9 bits (84), Expect = 0.052
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 211 DDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGXG 357
           DD+V V  +KI  ++K   V+VE +W G   K L   N+     + G G
Sbjct: 18  DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGAG 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,348,907
Number of Sequences: 237096
Number of extensions: 224627
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)