Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F24
         (935 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    69   7e-12
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    69   7e-12
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    69   7e-12
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    63   6e-10

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 69.3 bits (162), Expect = 7e-12
 Identities = 37/74 (50%), Positives = 38/74 (51%)
 Frame = +1

Query: 160 MVLKXELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXF 339
           M  K EL CV      VDDDV V GEKI  ILK   V+VE YW G   K LEG NV    
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 340 INXGXGVGXXXXXG 381
            N G GVG     G
Sbjct: 61  TNIGSGVGAAPAGG 74


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 69.3 bits (162), Expect = 7e-12
 Identities = 37/74 (50%), Positives = 38/74 (51%)
 Frame = +1

Query: 160 MVLKXELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXF 339
           M  K EL CV      VDDDV V GEKI  ILK   V+VE YW G   K LEG NV    
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 340 INXGXGVGXXXXXG 381
            N G GVG     G
Sbjct: 61  TNIGSGVGAAPAGG 74


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 69.3 bits (162), Expect = 7e-12
 Identities = 37/74 (50%), Positives = 38/74 (51%)
 Frame = +1

Query: 160 MVLKXELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXF 339
           M  K EL CV      VDDDV V GEKI  ILK   V+VE YW G   K LEG NV    
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 340 INXGXGVGXXXXXG 381
            N G GVG     G
Sbjct: 61  TNIGSGVGAAPAGG 74


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 62.9 bits (146), Expect = 6e-10
 Identities = 35/74 (47%), Positives = 36/74 (48%)
 Frame = +1

Query: 160 MVLKXELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXF 339
           M  K EL  V      VDDDV V GEKI  ILK   V+VE YW G   K LE  NV    
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLI 60

Query: 340 INXGXGVGXXXXXG 381
            N G GVG     G
Sbjct: 61  TNIGSGVGAAPAGG 74


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,858,812
Number of Sequences: 53049
Number of extensions: 63313
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4628299878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)