Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F24
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    52   6e-07
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    48   7e-06

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 26/68 (38%), Positives = 32/68 (47%)
 Frame = +1

Query: 160 MVLKXELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXF 339
           M    EL CV       DD+V + GEKI  +LK   V+ E YW G   K LEG +V    
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 340 INXGXGVG 363
            +   G G
Sbjct: 61  TSVSSGAG 68


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 25/68 (36%), Positives = 31/68 (45%)
 Frame = +1

Query: 160 MVLKXELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXF 339
           M    EL CV       DD+V + GEKI  +LK   V+ E  W G   K LEG +V    
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 340 INXGXGVG 363
            +   G G
Sbjct: 61  TSVSSGAG 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,934,982
Number of Sequences: 27780
Number of extensions: 28147
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)