Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F24
         (935 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     40   0.002
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    40   0.003
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    40   0.003
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    39   0.005
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    39   0.005
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       38   0.007

>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C        DD + +  E I  ++K   V+VE YW     K  E  N+    +N G 
Sbjct: 5   ELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGA 64

Query: 355 G 357
           G
Sbjct: 65  G 65


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C        D+ + +  +KI  ++K   V++E YW     K  E  NV    +N G 
Sbjct: 6   ELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 355 GVG 363
           G G
Sbjct: 66  GGG 68


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C        D+ + +  +KI  ++K   V++E YW     K  E  NV    +N G 
Sbjct: 6   ELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 355 GVG 363
           G G
Sbjct: 66  GGG 68


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C        D+ + +  +KI  ++K   V +E YW     K  E  NV    +N G 
Sbjct: 6   ELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 355 GVG 363
           G G
Sbjct: 66  GGG 68


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C        D+ + +  +KI  ++K   V +E YW     K  E  NV    +N G 
Sbjct: 6   ELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 355 GVG 363
           G G
Sbjct: 66  GGG 68


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +1

Query: 175 ELXCVXXXXXXVDDDVXVXGEKIXXILKXXXVDVEXYWXGXXXKXLEGXNVXXXFINXGX 354
           EL C        D+ + +  +KI  ++K   V +E YW     K  E  NV    +N G 
Sbjct: 6   ELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 355 GVG 363
           G G
Sbjct: 66  GGG 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,677,433
Number of Sequences: 28952
Number of extensions: 30555
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)