Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F23
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0292 + 22846273-22846377,22847161-22847823                       29   6.7  
06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302     28   8.8  
04_04_0234 - 23805383-23805502,23805652-23805733,23805820-238060...    28   8.8  

>03_05_0292 + 22846273-22846377,22847161-22847823
          Length = 255

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  ACGCLCFFVAFASGYVDKGSPPQWSQY 145
           ACGC+  F   A G V   + P+W ++
Sbjct: 196 ACGCMAEFAEVADGAVTPFARPRWDEF 222


>06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302
          Length = 299

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 155 RDSLNIPYAELHEPFYAWYDSKXSXSRIDYYGGMVXTYQFTSAVYPPYGXL 307
           RD   +  A  H  FY  Y    +  R++Y G  V T   +  V+  YG L
Sbjct: 51  RDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQL 101


>04_04_0234 -
           23805383-23805502,23805652-23805733,23805820-23806088,
           23806384-23806524,23806751-23806936,23807186-23807422,
           23807505-23807720,23807816-23808146,23808257-23808369,
           23808691-23808996,23809078-23809187,23810226-23810363,
           23811230-23811497
          Length = 838

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 96  SHLDMSIKGRHHNGVSIHSKGTP*IYPMLNCMSHSMLGTTVR 221
           S +  + +G HH G  I S+  P + P ++ M ++    TV+
Sbjct: 246 SEVHAATRGGHHRGKVISSEVVPEVQPAMDAMEYAECEATVK 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,852,746
Number of Sequences: 37544
Number of extensions: 173648
Number of successful extensions: 331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)