Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F23
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    29   4.5  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    29   4.5  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    29   4.5  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    29   4.5  

>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 78  CVFSWPSHLDMSIKGRHHNGVSIHSKGTP*IY 173
           C   +   LD     RHH+G+SIH +  P  Y
Sbjct: 517 CKLRYQKVLDAHSSSRHHSGMSIHGQHPPSTY 548


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 78  CVFSWPSHLDMSIKGRHHNGVSIHSKGTP*IY 173
           C   +   LD     RHH+G+SIH +  P  Y
Sbjct: 494 CKLRYQKVLDAHSSSRHHSGMSIHGQHPPSTY 525


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 78  CVFSWPSHLDMSIKGRHHNGVSIHSKGTP*IY 173
           C   +   LD     RHH+G+SIH +  P  Y
Sbjct: 656 CKLRYQKVLDAHSSSRHHSGMSIHGQHPPSTY 687


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 78  CVFSWPSHLDMSIKGRHHNGVSIHSKGTP*IY 173
           C   +   LD     RHH+G+SIH +  P  Y
Sbjct: 605 CKLRYQKVLDAHSSSRHHSGMSIHGQHPPSTY 636


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,737,876
Number of Sequences: 27780
Number of extensions: 152182
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)