Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_F22
(949 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 69 6e-12
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 62 6e-10
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 59 6e-09
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 39 0.005
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 29 4.2
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 29 7.3
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 29 7.3
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 9.6
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 69.3 bits (162), Expect = 4e-12
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +3
Query: 282 CTHLLYGYAGIQPXFYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTE 461
CTH++Y +A I P K+ + N DR Y+ I LK K P L LL+VGG
Sbjct: 427 CTHIVYAFAKIDPATNKIGTYEWN--DDRL---YKEINDLKLKNPSLKTLLAVGGWNHES 481
Query: 462 EP-EKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 584
P ++ ++ S+ RT FI+S + L+++Y FDG DL W++P
Sbjct: 482 GPVSPFSQMVASKSNRTTFISSLLQLSDKYDFDGFDLDWEYP 523
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 68.9 bits (161), Expect = 6e-12
Identities = 34/113 (30%), Positives = 60/113 (53%)
Frame = +3
Query: 282 CTHLLYGYAGIQPXFYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTE 461
CTH+L+ +A + +KL EN H+ Y+ I +LK P L ++VGG E
Sbjct: 50 CTHILFSFAKVNQTTHKLDIYEEN-----DHELYQRINALKKINPKLKTQIAVGGWTHEE 104
Query: 462 EPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVKPXKIRSXXG 620
+ ++ ++ +++ R FI S + +GFDG+DL W++P ++ +S G
Sbjct: 105 KNSPFSKMVATKEKRAIFIKSAIETLRTHGFDGLDLDWEYPGMRGGSPKSDKG 157
Score = 58.0 bits (134), Expect = 1e-08
Identities = 29/113 (25%), Positives = 57/113 (50%)
Frame = +3
Query: 282 CTHLLYGYAGIQPXFYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTE 461
CTH+++ ++ + + + +N D Y+ I +LK P L ++VGG E
Sbjct: 435 CTHVIHSFSKVNLTTHVMEKYEKN-----DFDLYKRINALKKINPKLKTQIAVGGWTHEE 489
Query: 462 EPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVKPXKIRSXXG 620
+ ++ ++ +++ R FI S + GFDG+DL W++P ++ +S G
Sbjct: 490 KNSPFSKMVATKEKRAIFIKSAIETLRTNGFDGLDLDWEYPGMRGGSPKSDKG 542
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 62.1 bits (144), Expect = 6e-10
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Frame = +3
Query: 255 WTSXPALSFCTHLLYGYAGIQPXFYKLVSLNENLDIDRTHDN-YRAITSLKAKYPGLTVL 431
W CTHL+Y +A K+ NE + D Y +LK K P L L
Sbjct: 39 WPEDIPADLCTHLMYSFA-------KINQKNELAMYEWNDDKLYPRFNALKQKNPELKTL 91
Query: 432 LSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVK---PXK 602
L+VGG ++ ++++ R FI+S + + +GFDG+DL W++P + P +
Sbjct: 92 LAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGFDGLDLDWEYPATRGGSPPE 151
Query: 603 IRSXXGSLXHGIKNTF 650
+ L + NTF
Sbjct: 152 DKQRFTVLCQELMNTF 167
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 58.8 bits (136), Expect = 6e-09
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +3
Query: 261 SXPALSFCTHLLYGYAGIQPXFYKLVSLNENLDIDRTHDN--YRAITSLKAKYPGLTVLL 434
S + T LL G+A + L + +D+ Y+ LK K PGL LL
Sbjct: 145 SNKTMQLLTLLLLGFASFAAASNYVHRCRHTLAMFEWNDDKLYKEFNDLKLKNPGLKTLL 204
Query: 435 SVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 584
+VGG ++ ++ + +R FI+S + + Q+ FDG DL W++P
Sbjct: 205 AVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDGFDLDWEYP 254
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/103 (29%), Positives = 49/103 (47%)
Frame = +3
Query: 276 SFCTHLLYGYAGIQPXFYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDAD 455
S CTH++Y +A + KL N D Y+ + LK+ + LL+VGG
Sbjct: 48 SLCTHIVYAFAKMNADNSKLAMFEWN---DAAM--YKKVNDLKSS-SNMKTLLAVGGWNM 101
Query: 456 TEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 584
P + ++ + R FI+ +L + FDG+DL W++P
Sbjct: 102 GSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYP 142
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 39.1 bits (87), Expect = 0.005
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 381 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 560
Y+ + LK+ + LL+VGG P + ++ + R FI+ +L + FDG
Sbjct: 2 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58
Query: 561 IDLAWQFP 584
+DL W++P
Sbjct: 59 LDLDWEYP 66
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 559 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 431
P P C A S+ E + ++R D RR+ F G V PP N
Sbjct: 384 PDIPICVAASSSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 428
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 559 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 431
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 559 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 431
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 559 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 431
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWISDDRGRRVDFKGKPVRLCPPPAN 227
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 375 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 482
DNY + + YP T V+LS GDA T +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,266,991
Number of Sequences: 59808
Number of extensions: 392475
Number of successful extensions: 825
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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