Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F21
         (927 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  28   9.3  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/81 (22%), Positives = 22/81 (27%)
 Frame = +3

Query: 675 PPXXXPPXXXPXXXXRXPXGSPLXXRXSXXPPPXPXXLXXXXXXXPTXXXXXDXXPFXXX 854
           PP   P    P      P  +P     +   PP P          P         P+   
Sbjct: 118 PPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPP 177

Query: 855 XFGPPPXPSXXXPXXXPRXXP 917
            + PPP P    P   P   P
Sbjct: 178 PYPPPPNPPYPPPPNPPYPPP 198


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +2

Query: 665 PIFPPXXXPPXPXXXXXXPXAGXISPLXEGFXXAPPXXXPPLXXXGPXP 811
           P  PP   PP        P    + P   GF   PP   PP    GP P
Sbjct: 452 PQLPPNLPPPPGGMRGMPPPPMGMYPPPRGF-PPPPFGPPPPFYRGPPP 499


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/78 (24%), Positives = 20/78 (25%)
 Frame = +3

Query: 675 PPXXXPPXXXPXXXXRXPXGSPLXXRXSXXPPPXPXXLXXXXXXXPTXXXXXDXXPFXXX 854
           PP   PP   P      P   P        PPP P          P         P    
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424

Query: 855 XFGPPPXPSXXXPXXXPR 908
              PPP P+       PR
Sbjct: 425 PPPPPPPPALRLACAPPR 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,655
Number of Sequences: 59808
Number of extensions: 221553
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)