Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F21
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.0  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/56 (28%), Positives = 18/56 (32%)
 Frame = +2

Query: 674 PPXXXPPXPXXXXXXPXAGXISPLXEGFXXAPPXXXPPLXXXGPXPHXXXXGXXXP 841
           PP   PP        P  G + P+  G    PP    P    GP P     G   P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/56 (28%), Positives = 18/56 (32%)
 Frame = +2

Query: 674 PPXXXPPXPXXXXXXPXAGXISPLXEGFXXAPPXXXPPLXXXGPXPHXXXXGXXXP 841
           PP   PP        P  G + P+  G    PP    P    GP P     G   P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/56 (28%), Positives = 18/56 (32%)
 Frame = +2

Query: 674 PPXXXPPXPXXXXXXPXAGXISPLXEGFXXAPPXXXPPLXXXGPXPHXXXXGXXXP 841
           PP   PP        P  G + P+  G    PP    P    GP P     G   P
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 650 SNKXXPIFPPXXXPPXPXXXXXXPXAGXISPLXEGFXXAPPXXXPP 787
           S    P FPP   PP P      P A  +  L + +   PP   PP
Sbjct: 105 STSQPPAFPPPPRPPKP-EQYKFPPAPSVPLLHDRYFVPPPPPVPP 149


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 650 SNKXXPIFPPXXXPPXPXXXXXXPXAGXISPLXEGFXXAPPXXXPP 787
           S    P FPP   PP P      P A  +  L + +   PP   PP
Sbjct: 105 STSQPPAFPPPPRPPKP-EQYKFPPAPSVPLLHDRYFVPPPPPVPP 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,453
Number of Sequences: 27780
Number of extensions: 185268
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)