Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F21
         (927 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    30   2.5  
At4g34440.1 68417.m04894 protein kinase family protein contains ...    29   3.3  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    29   4.4  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   5.8  

>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/81 (24%), Positives = 22/81 (27%)
 Frame = +3

Query: 675 PPXXXPPXXXPXXXXRXPXGSPLXXRXSXXPPPXPXXLXXXXXXXPTXXXXXDXXPFXXX 854
           PP   PP   P      P   P        PPP P          P+        P    
Sbjct: 376 PPSPPPPPPPPPPPPPPPPPPP---PPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPY 432

Query: 855 XFGPPPXPSXXXPXXXPRXXP 917
            + PPP P    P   P   P
Sbjct: 433 VYPPPPSPPYVYPPPPPSPQP 453


>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/65 (24%), Positives = 19/65 (29%)
 Frame = +2

Query: 677 PXXXPPXPXXXXXXPXAGXISPLXEGFXXAPPXXXPPLXXXGPXPHXXXXGXXXPLXXXE 856
           P    P P      P +   SP  E     PP   PP     P P         P    +
Sbjct: 5   PVDSSPAPETSNGTPPSNGTSPSNESSPPTPPSSPPPSSISAPPPDISASFSPPPAPPTQ 64

Query: 857 XWAPP 871
             +PP
Sbjct: 65  ETSPP 69


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +2

Query: 674 PPXXXPPXPXXXXXXPXAGXISPLXEGFXXAPPXXXPPLXXXGPXP 811
           PP   PP P      P     SP    +   PP   PP     P P
Sbjct: 553 PPVYSPPPPPPPVHSPPPPVFSPPPPVYSPPPPVHSPPPPVHSPPP 598


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/83 (25%), Positives = 23/83 (27%)
 Frame = +3

Query: 675 PPXXXPPXXXPXXXXRXPXGSPLXXRXSXXPPPXPXXLXXXXXXXPTXXXXXDXXPFXXX 854
           PP   PP   P      P   P+    S  PPP P          P         P    
Sbjct: 441 PPPPPPPVYSPPPPPPPPPPPPV---YSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSP 497

Query: 855 XFGPPPXPSXXXPXXXPRXXPTF 923
              PPP P    P   P   P +
Sbjct: 498 P--PPPPPPPPPPVYSPPPPPVY 518



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/82 (24%), Positives = 23/82 (28%)
 Frame = +3

Query: 675 PPXXXPPXXXPXXXXRXPXGSPLXXRXSXXPPPXPXXLXXXXXXXPTXXXXXDXXPFXXX 854
           PP   P    P      P   P+       PPP P  +       P         P    
Sbjct: 457 PPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPP--------PPPPPP 508

Query: 855 XFGPPPXPSXXXPXXXPRXXPT 920
            + PPP P    P   P   PT
Sbjct: 509 VYSPPPPPVYSSPPPPPSPAPT 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,020,183
Number of Sequences: 28952
Number of extensions: 191809
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)