Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F18
         (882 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.15 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.7  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 413 CSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDC 547
           C  G VC I++ G  +C    DCP  T+         NE   + C
Sbjct: 385 CQNGGVCRISDGGGYIC----DCPSGTNGTNCEIDTINECDSNPC 425


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 287 SLDEKRYHEAEIARV 331
           SLDEK+Y   E+ RV
Sbjct: 334 SLDEKKYILQEVVRV 348


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/42 (26%), Positives = 15/42 (35%)
 Frame = +2

Query: 470 IKDCPYETDSRRMVCTNFNETWQSDCXVYRQRCLCLDNSDQC 595
           I DC          C +    +Q  C    +  LC  N+D C
Sbjct: 69  INDCKVNPCENGGTCVDKINAFQCICKEGWEGALCNINTDDC 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,008
Number of Sequences: 336
Number of extensions: 3439
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)