Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F18
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    30   0.50 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.7  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    27   2.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.5  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    27   4.7  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   6.2  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    26   8.2  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    26   8.2  

>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 618 TWWYXGP--RH*SELSRHKHRWRYTSQSD 538
           T+WY  P  RH  E  +  H W Y+S  D
Sbjct: 44  TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 413  CSAGRVCEINEHGDAMCNCIKDC 481
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -3

Query: 634 VILDLNVVVXRTTALIRVVEA*ASLAVYXAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 455
           ++  LN+ V +   +++++E  A    +  I  PG +E+    ASG  +  T+  +    
Sbjct: 80  IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLASSWPTC 139

Query: 454 VSVFVD 437
           ++  VD
Sbjct: 140 IAYVVD 145


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 702  PACXRGKSDISLSVQSGISRHVP*YSI*TWWYXGP 598
            P C     DI  S+    SR +  ++I  WW  GP
Sbjct: 1627 PLCNFESDDIQYSIDVVYSRKLKEHNIILWWNKGP 1661


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = -3

Query: 445 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 266
           ++ F +   + V+   RV+ VD    +  +    +  + +  + L +SLL+ A   + + 
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413

Query: 265 VFSLRDVPAAELLRRWTFSS 206
           ++S  D  A E L  ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 319 FCLMVSLLVQALRHSVLDVFSLRD 248
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 710 KPVPHAXGGSQTSRFQCSQAFL 645
           +P+PH  G  QT RF+ ++ F+
Sbjct: 46  QPLPHTAGRFQTKRFRKARCFI 67


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 710 KPVPHAXGGSQTSRFQCSQAFL 645
           +P+PH  G  QT RF+ ++ F+
Sbjct: 46  QPLPHTAGRFQTKRFRKARCFI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,112
Number of Sequences: 5004
Number of extensions: 53047
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)