Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F18
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0344 + 22540436-22540737,22541304-22543545                       31   0.93 
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845     30   2.1  
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880...    29   3.7  
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335...    29   4.9  
03_02_0520 + 9092020-9092079,9092253-9093047                           29   6.5  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    28   8.6  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           28   8.6  

>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 615 TFKSSITERAEKCLTALKARCLTSPXRMR 701
           T +S   ERAE+C + L  RC+  P R R
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRPARTR 327


>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
          Length = 439

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -3

Query: 361 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 188
           F+ D    +  SG+  + LM+     ALR +V   F         L R W FS  G  P 
Sbjct: 9   FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68

Query: 187 VPTP 176
             +P
Sbjct: 69  QSSP 72


>08_02_0739 +
           20584264-20584626,20586943-20587011,20587696-20588006,
           20588447-20588648,20588887-20588958
          Length = 338

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 509 VCTNFNETWQSDCXVYRQRCLCLDNSDQCRGPXYHHVQIEYYGTCREMPDCTESEM--SD 682
           +CTN    +  DC   R  C   D+  QCRG  +   + E  G C ++ + +E+E+  SD
Sbjct: 232 MCTNVRLVF--DCT--RDGCRRKDSWAQCRGCFFCVARCETCGGCIDLEELSETELACSD 287

Query: 683 F 685
           F
Sbjct: 288 F 288


>09_04_0330 +
           16731390-16731699,16731774-16732080,16732182-16733561,
           16734064-16734112
          Length = 681

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 404 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 538
           K   +A  VCE +  G+ + +C      + D  RM C +  E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645


>03_02_0520 + 9092020-9092079,9092253-9093047
          Length = 284

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 274 VLDVFSLRDVPAAELLRRWTFSSR 203
           VLD+ +++ +PA  +L+RWT  +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 390 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 533
           +T A    ++Q ++   T+ ++   ++S TV + + P +W   TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 337 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 203
           + + G F  +  L   AL+  VLD+ ++  +PA  +L+RWT  +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,660,343
Number of Sequences: 37544
Number of extensions: 448262
Number of successful extensions: 1075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)