Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F17
         (947 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, t...    39   0.031
X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...    38   0.040
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...    38   0.040

>AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 precursor variant protein.
          Length = 151

 Score = 38.7 bits (86), Expect = 0.031
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 186 VTTRLCREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSIXKLKTGLFGL 365
           V  R C  VD     + EV + PC  ++ C L KG++  V+  FT        K  + G+
Sbjct: 22  VQFRDCGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNVQSKSSKAVVHGI 77

Query: 366 KNGAEIPFDALYNADAC-TLTSCPXEAGK 449
             G  +PF  +   D C +  +CP +  K
Sbjct: 78  LMGVPVPF-PIPEPDGCKSGINCPIQKDK 105


>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score = 38.3 bits (85), Expect = 0.040
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +3

Query: 201 CREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSIXKLKTGLFGLKNGAE 380
           C  VD     + EV + PC  ++ C L KG++  V+  FT        K  + G+  G  
Sbjct: 27  CGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVP 82

Query: 381 IPFDALYNADAC-TLTSCPXEAGK 449
           +PF  +   D C +  +CP +  K
Sbjct: 83  VPF-PIPEPDGCKSGINCPIQKDK 105


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score = 38.3 bits (85), Expect = 0.040
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +3

Query: 201 CREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSIXKLKTGLFGLKNGAE 380
           C  VD     + EV + PC  ++ C L KG++  V+  FT        K  + G+  G  
Sbjct: 27  CGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVP 82

Query: 381 IPFDALYNADAC-TLTSCPXEAGK 449
           +PF  +   D C +  +CP +  K
Sbjct: 83  VPF-PIPEPDGCKSGINCPIQKDK 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,819,397
Number of Sequences: 237096
Number of extensions: 1054567
Number of successful extensions: 1559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)