Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F16
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56076| Best HMM Match : 7tm_1 (HMM E-Value=8.7e-06)                 29   6.5  
SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)                 29   6.5  
SB_52529| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   6.5  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               29   6.5  
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 28   8.6  

>SB_56076| Best HMM Match : 7tm_1 (HMM E-Value=8.7e-06)
          Length = 207

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 153 IGSLRNSL*VYVNSKADVETSSGAVLIT*CALSRISXNLXGSLXTXXW 10
           + ++ N+L +YVNSK  + T++  +LI   A+  +   L G   T  W
Sbjct: 30  LSTVANTLIIYVNSKPRMHTTTN-ILILNMAVGNVIVTLVGCPITSMW 76


>SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)
          Length = 276

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 153 IGSLRNSL*VYVNSKADVETSSGAVLIT*CALSRISXNLXGSLXTXXW 10
           + ++ N+L +YVNSK  + T++  +LI   A+  +   L G   T  W
Sbjct: 19  LSTVANTLIIYVNSKPRMRTTTN-ILILNMAVGHVIVTLVGCPITSMW 65


>SB_52529| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 415

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 153 IGSLRNSL*VYVNSKADVETSSGAVLIT*CALSRISXNLXGSLXTXXW 10
           + ++ N+L +YVNSK  + T++  +LI   A+  +   L G   T  W
Sbjct: 177 LSTVANTLIIYVNSKPRMHTTTN-ILILNMAVGHVIVTLVGCPITSMW 223


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 769 PXXVPRPXGGXGXXXPXXXXPXPPGXXGXXYXAPPP 876
           P   P P  G     P    P PPG  G     PPP
Sbjct: 302 PAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 153 IGSLRNSL*VYVNSKADVETSSGAVLIT*CALSRISXNLXGSLXTXXW 10
           + ++ N L +YVNSK  + T++  +LI   A+S +   L G   T  W
Sbjct: 29  LSTVANVLTIYVNSKPRMRTTTN-ILILNMAVSDVIVTLIGCPITVAW 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,930,753
Number of Sequences: 59808
Number of extensions: 318685
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)