BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP04_F_F16 (876 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.5 U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.5 AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 29 5.8 >Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein C08B11.5 protein. Length = 388 Score = 29.9 bits (64), Expect = 2.5 Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 5/98 (5%) Frame = +3 Query: 597 PXXXGXWXPXLIXXXDXL-GPPKLKCXEKXLXXXXXGPXGXXG----PXSXXQXPXXXPQ 761 P G W P GPP + GP G G P + P P Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 349 Query: 762 XPSXXXSTXXGRXXXXXPPXXXPPPPXXXGXXXXGPPP 875 P + PP P PP G PPP Sbjct: 350 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387 >U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding protein protein. Length = 398 Score = 29.9 bits (64), Expect = 2.5 Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 5/98 (5%) Frame = +3 Query: 597 PXXXGXWXPXLIXXXDXL-GPPKLKCXEKXLXXXXXGPXGXXG----PXSXXQXPXXXPQ 761 P G W P GPP + GP G G P + P P Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 359 Query: 762 XPSXXXSTXXGRXXXXXPPXXXPPPPXXXGXXXXGPPP 875 P + PP P PP G PPP Sbjct: 360 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397 >AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family protein 31 protein. Length = 747 Score = 28.7 bits (61), Expect = 5.8 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 385 YILKLTSRLNNTSIYGARFKYHFPIALAEXRTSIAGPALTMP 260 ++L L+ L S Y K HFP TS+ GPA+ +P Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,459,628 Number of Sequences: 27780 Number of extensions: 263257 Number of successful extensions: 730 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 666 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2202903780 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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