Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F16
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.5  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   5.8  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
 Frame = +3

Query: 597 PXXXGXWXPXLIXXXDXL-GPPKLKCXEKXLXXXXXGPXGXXG----PXSXXQXPXXXPQ 761
           P   G W P          GPP +            GP G  G    P    + P   P 
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 349

Query: 762 XPSXXXSTXXGRXXXXXPPXXXPPPPXXXGXXXXGPPP 875
            P     +         PP   P PP   G     PPP
Sbjct: 350 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
 Frame = +3

Query: 597 PXXXGXWXPXLIXXXDXL-GPPKLKCXEKXLXXXXXGPXGXXG----PXSXXQXPXXXPQ 761
           P   G W P          GPP +            GP G  G    P    + P   P 
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 359

Query: 762 XPSXXXSTXXGRXXXXXPPXXXPPPPXXXGXXXXGPPP 875
            P     +         PP   P PP   G     PPP
Sbjct: 360 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 385 YILKLTSRLNNTSIYGARFKYHFPIALAEXRTSIAGPALTMP 260
           ++L L+  L   S Y    K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,628
Number of Sequences: 27780
Number of extensions: 263257
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)