Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F16
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   4.1  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    25   4.6  
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family...    28   7.1  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    28   7.1  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 873 GGGPIXXPXXPXGXGXXXXGXXPPXXSPXXWNXXRKAXGG 754
           GGGP   P  P G      G  PP   P      R A GG
Sbjct: 676 GGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGG 715


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 25.4 bits (53), Expect(2) = 4.6
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 813 PPXXXPPPPXXXGXXXXGPPP 875
           PP   PPPP         PPP
Sbjct: 469 PPPPPPPPPPVYSPPPPSPPP 489



 Score = 21.8 bits (44), Expect(2) = 4.6
 Identities = 11/39 (28%), Positives = 11/39 (28%)
 Frame = +3

Query: 723 PXSXXQXPXXXPQXPSXXXSTXXGRXXXXXPPXXXPPPP 839
           P      P   P  P    S          PP   PPPP
Sbjct: 431 PPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPP 469


>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At3g25690,
           At5g61090 [Arabidopsis thaliana]
          Length = 681

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = +3

Query: 744 PXXXPQXPSXXXSTXXGRXXXXXPPXXXPPPPXXXGXXXXGPPP 875
           P   PQ PS   ST   +      P   PP P         PPP
Sbjct: 301 PLTSPQTPSPTVSTFNTKSSLRSQPPPPPPSPEHKAPAPPPPPP 344


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 744 PXXXPQXPSXXXSTXXGRXXXXXPPXXXPPPPXXXGXXXXGPPP 875
           P   P  P    ST   R     PP   PPP          PPP
Sbjct: 618 PPPPPPPPPSFGSTGNKRQAQPPPPPPPPPPTRIPAAKCAPPPP 661


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,343
Number of Sequences: 28952
Number of extensions: 238102
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)