Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F15
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)                29   5.1  
SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)                        29   6.8  

>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 484 GAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCST 359
           G   PC+RC   + P    P   R +   WR LA ALS  +T
Sbjct: 95  GQNNPCSRCGLLSCPTTTSP-EKRRKTPSWRTLAPALSPSAT 135


>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
          Length = 337

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -3

Query: 484 GAPRPCARCSASTVPKPPWPCR-----SRLRALPWRLLAKALSCCSTDSEPS 344
           G P P   C    +P PP  C+     S L A  +  +  +L  C +D  PS
Sbjct: 123 GIPSPLVACKFDDIPSPPVACKFDDIPSTLVACEFDGIPSSLVTCESDGIPS 174



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -3

Query: 484 GAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQXLLKSCASFDL 305
           G P P     +  +P PP  C+S    +P  L+A     C  D  PS    L +C S  +
Sbjct: 183 GIPSPLVAYGSDGIPSPPVACKS--DGIPSTLVA-----CKFDGIPS---SLVACKSDGI 232

Query: 304 VSELNCC 284
            S L  C
Sbjct: 233 TSSLAAC 239


>SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 472 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSE 350
           P +RC   + P    P + R + L WR LA ALS  +T  +
Sbjct: 54  PWSRCGLLSCPTTTSPAKRR-KTLSWRTLAPALSPSATQPD 93


>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 2590

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 506 EKNATXLREKLQAAVQNTVQESQKLAKKVXSNVQETNEKLAPKIKXXYXDFXKNTQ 673
           EKN   L E   +A+QNT+Q          + + E     A KI+    +  K T+
Sbjct: 272 EKNGIFLSEDSYSAMQNTIQSQTSRITHFETRLPEMEADFAAKIEAMEAELQKVTE 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,705
Number of Sequences: 59808
Number of extensions: 201886
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)