Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F15
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    29   4.5  
AF038606-4|AAB92026.1|  331|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF038606-3|AAX55701.1|  393|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF038606-2|AAX55700.1|  404|Caenorhabditis elegans Hypothetical ...    29   4.5  
AB182367-3|BAD23998.1|  331|Caenorhabditis elegans hypothetical ...    29   4.5  
AB182367-2|BAD23997.1|  393|Caenorhabditis elegans hypothetical ...    29   4.5  
AB182367-1|BAD23996.1|  404|Caenorhabditis elegans hypothetical ...    29   4.5  

>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 509  KNATXLREKLQAAVQNTVQESQKLAKKVXSNVQETNEKLAPKIKXXYXDFXKNTQEVIKK 688
            +N   + +K    VQ   +  QK+ KK   NVQ+  +K A   K       KN Q++ KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKC----AKNVQKMCKK 1320


>AF038606-4|AAB92026.1|  331|Caenorhabditis elegans Hypothetical
           protein C04C3.5a protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 536 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKXXYXDFXK 664
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y    K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154


>AF038606-3|AAX55701.1|  393|Caenorhabditis elegans Hypothetical
           protein C04C3.5c protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 536 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKXXYXDFXK 664
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y    K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216


>AF038606-2|AAX55700.1|  404|Caenorhabditis elegans Hypothetical
           protein C04C3.5b protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 536 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKXXYXDFXK 664
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y    K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227


>AB182367-3|BAD23998.1|  331|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 536 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKXXYXDFXK 664
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y    K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154


>AB182367-2|BAD23997.1|  393|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 536 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKXXYXDFXK 664
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y    K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216


>AB182367-1|BAD23996.1|  404|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 536 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKXXYXDFXK 664
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y    K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,473,119
Number of Sequences: 27780
Number of extensions: 145814
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)