Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F14
         (885 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P13276 Cluster: Apolipophorin-3 precursor; n=11; Ditrys...    94   4e-18

>UniRef50_P13276 Cluster: Apolipophorin-3 precursor; n=11;
           Ditrysia|Rep: Apolipophorin-3 precursor - Manduca sexta
           (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 189

 Score = 94.3 bits (224), Expect = 4e-18
 Identities = 63/154 (40%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
 Frame = +1

Query: 193 AMVRREXPX---FFXDXEHHTKEFHXTLQXXCNSLTKSKDAQDFRKAWKXGSXIRAXTAQ 363
           AMVRR+ P     F + E H KEF  T     NSL  SK+ QDF KA K GS        
Sbjct: 19  AMVRRDAPAGGNAFEEMEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLS 78

Query: 364 RLRQESPVXRSXTRTERPXXLWNXXXXXXXXXXXXXXXPTLDVXKNAXXLREKLQAAVXN 543
                     S    +    L                    DV K A   ++KLQAAV  
Sbjct: 79  AFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHP-DVEKEANAFKDKLQAAVQT 137

Query: 544 TVQESQKLANXVSSNVXETNEKLAPKIKXXYXDF 645
           TVQESQKLA  V+SN+ ETN+KLAPKIK  Y DF
Sbjct: 138 TVQESQKLAKEVASNMEETNKKLAPKIKQAYDDF 171



 Score = 41.1 bits (92), Expect = 0.036
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +3

Query: 390 ALXXANGKAXXALEQSRQNI*RTVEELRK 476
           A+  ANGKA  ALEQ+RQN+ +T EELRK
Sbjct: 87  AISDANGKAKEALEQARQNVEKTAEELRK 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,908,929
Number of Sequences: 1657284
Number of extensions: 4963784
Number of successful extensions: 7620
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7619
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)