Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F12
         (935 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar...    48   3e-04
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard...    38   0.37 

>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
           Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 262

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 36/172 (20%), Positives = 52/172 (30%)
 Frame = +2

Query: 200 GLKXXXKGXXXPKXWXXXKXGGXFXXKR*XXPXNXGXXXPXXIFXXNXXNXXXXXKKFLK 379
           GLK   K    PK W   K GG F  K    P       P  +   N        ++ + 
Sbjct: 4   GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63

Query: 380 XXKKXXXXVXGKFXXDPIXXGGXXXXVXMXKXXXXFXXIXXXRGXXKIXXLTXXXXNXNX 559
              +    V GK   D     G    V + K    F  +   +G  ++  +         
Sbjct: 64  ILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKL 123

Query: 560 FKLKXXGTXXKNFPXLXXXXGGXXXYXNPFLKVXXSFHLXXAXXKNXGFXXF 715
            K++      K  P L    G    Y +P +K   +  L     K   F  F
Sbjct: 124 CKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKF 175


>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
           theta|Rep: 40S ribosomal protein S4 - Guillardia theta
           (Cryptomonas phi)
          Length = 257

 Score = 37.9 bits (84), Expect = 0.37
 Identities = 39/192 (20%), Positives = 54/192 (28%)
 Frame = +2

Query: 200 GLKXXXKGXXXPKXWXXXKXGGXFXXKR*XXPXNXGXXXPXXIFXXNXXNXXXXXKKFLK 379
           G+K   K    PK W   K GG +  +    P       P  I   N        ++ L 
Sbjct: 4   GIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLN 63

Query: 380 XXKKXXXXVXGKFXXDPIXXGGXXXXVXMXKXXXXFXXIXXXRGXXKIXXLTXXXXNXNX 559
             KK    V GK   D     G    + +      +  +    G   +  +T        
Sbjct: 64  ILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKL 123

Query: 560 FKLKXXGTXXKNFPXLXXXXGGXXXYXNPFLKVXXSFHLXXAXXKNXGFXXF*FWEXXFX 739
            K+       K  P +    G    + N  +K   S  L     K   F  F        
Sbjct: 124 CKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVV 183

Query: 740 IXGEXXNXGXXG 775
           I G   N G  G
Sbjct: 184 IKGS--NIGRIG 193


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,340,768
Number of Sequences: 1657284
Number of extensions: 2066477
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)