Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F12
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31...    46   3e-05
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972...    46   3e-05

>02_01_0047 -
           316960-317397,317647-317744,317837-318017,318122-318199,
           319023-319025
          Length = 265

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 33/172 (19%), Positives = 52/172 (30%)
 Frame = +2

Query: 200 GLKXXXKGXXXPKXWXXXKXGGXFXXKR*XXPXNXGXXXPXXIFXXNXXNXXXXXKKFLK 379
           GLK   K    PK W   K GG F  K    P       P  +   N        ++ + 
Sbjct: 4   GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVIS 63

Query: 380 XXKKXXXXVXGKFXXDPIXXGGXXXXVXMXKXXXXFXXIXXXRGXXKIXXLTXXXXNXNX 559
              +    V GK   D     G    + + K    +  +   +G  ++  +         
Sbjct: 64  ILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKL 123

Query: 560 FKLKXXGTXXKNFPXLXXXXGGXXXYXNPFLKVXXSFHLXXAXXKNXGFXXF 715
            K++      K  P L    G    Y +P +K   +  +     K   F  F
Sbjct: 124 CKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKF 175


>01_03_0277 +
           14496298-14496300,14496875-14496952,14497061-14497241,
           14497348-14497445,14497542-14497979
          Length = 265

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 33/172 (19%), Positives = 52/172 (30%)
 Frame = +2

Query: 200 GLKXXXKGXXXPKXWXXXKXGGXFXXKR*XXPXNXGXXXPXXIFXXNXXNXXXXXKKFLK 379
           GLK   K    PK W   K GG F  K    P       P  +   N        ++ + 
Sbjct: 4   GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVIS 63

Query: 380 XXKKXXXXVXGKFXXDPIXXGGXXXXVXMXKXXXXFXXIXXXRGXXKIXXLTXXXXNXNX 559
              +    V GK   D     G    + + K    +  +   +G  ++  +         
Sbjct: 64  ILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKL 123

Query: 560 FKLKXXGTXXKNFPXLXXXXGGXXXYXNPFLKVXXSFHLXXAXXKNXGFXXF 715
            K++      K  P L    G    Y +P +K   +  +     K   F  F
Sbjct: 124 CKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKF 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,153,768
Number of Sequences: 37544
Number of extensions: 66046
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)