Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F12
         (935 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...    48   9e-06
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)              48   9e-06
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...    48   9e-06

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 36/172 (20%), Positives = 52/172 (30%)
 Frame = +2

Query: 200 GLKXXXKGXXXPKXWXXXKXGGXFXXKR*XXPXNXGXXXPXXIFXXNXXNXXXXXKKFLK 379
           GLK   K    PK W   K GG F  K    P       P  +   N        ++ + 
Sbjct: 4   GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63

Query: 380 XXKKXXXXVXGKFXXDPIXXGGXXXXVXMXKXXXXFXXIXXXRGXXKIXXLTXXXXNXNX 559
              +    V GK   D     G    V + K    F  +   +G  ++  +         
Sbjct: 64  ILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKL 123

Query: 560 FKLKXXGTXXKNFPXLXXXXGGXXXYXNPFLKVXXSFHLXXAXXKNXGFXXF 715
            K++      K  P L    G    Y +P +K   +  L     K   F  F
Sbjct: 124 CKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKF 175


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 36/172 (20%), Positives = 52/172 (30%)
 Frame = +2

Query: 200 GLKXXXKGXXXPKXWXXXKXGGXFXXKR*XXPXNXGXXXPXXIFXXNXXNXXXXXKKFLK 379
           GLK   K    PK W   K GG F  K    P       P  +   N        ++ + 
Sbjct: 4   GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63

Query: 380 XXKKXXXXVXGKFXXDPIXXGGXXXXVXMXKXXXXFXXIXXXRGXXKIXXLTXXXXNXNX 559
              +    V GK   D     G    V + K    F  +   +G  ++  +         
Sbjct: 64  ILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKL 123

Query: 560 FKLKXXGTXXKNFPXLXXXXGGXXXYXNPFLKVXXSFHLXXAXXKNXGFXXF 715
            K++      K  P L    G    Y +P +K   +  L     K   F  F
Sbjct: 124 CKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKF 175


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 36/172 (20%), Positives = 52/172 (30%)
 Frame = +2

Query: 200 GLKXXXKGXXXPKXWXXXKXGGXFXXKR*XXPXNXGXXXPXXIFXXNXXNXXXXXKKFLK 379
           GLK   K    PK W   K GG F  K    P       P  +   N        ++ + 
Sbjct: 4   GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63

Query: 380 XXKKXXXXVXGKFXXDPIXXGGXXXXVXMXKXXXXFXXIXXXRGXXKIXXLTXXXXNXNX 559
              +    V GK   D     G    V + K    F  +   +G  ++  +         
Sbjct: 64  ILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKL 123

Query: 560 FKLKXXGTXXKNFPXLXXXXGGXXXYXNPFLKVXXSFHLXXAXXKNXGFXXF 715
            K++      K  P L    G    Y +P +K   +  L     K   F  F
Sbjct: 124 CKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKF 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,372,958
Number of Sequences: 28952
Number of extensions: 49294
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)