Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F07
         (1191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0047 - 15408802-15409068,15409418-15409478,15409516-154096...    29   7.2  

>01_04_0047 -
           15408802-15409068,15409418-15409478,15409516-15409626,
           15409707-15409958,15410044-15410270,15410971-15411230,
           15411373-15412279,15412370-15412567
          Length = 760

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/73 (23%), Positives = 28/73 (38%)
 Frame = -3

Query: 241 PFXISXDKATPEA*LPDHC*KTRSLNCPERKSRRASGQPRXERVEGRATRPGPEHWLAPX 62
           PF +   +  P    PD+    +++    R  R+A+   R E VE       PEH     
Sbjct: 43  PFPMEITQVAPRDDDPDYIPMEQAMVVRRRSKRKAARNRREEEVEMDTATSAPEHTETST 102

Query: 61  RTGAKDERKAPXR 23
             G   +++   R
Sbjct: 103 SAGGSGKKRRGER 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,862
Number of Sequences: 37544
Number of extensions: 195023
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3631571424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)