Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_F06
(1462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 38 0.005
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.099
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.70
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.9
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 6.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 8.6
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 37.5 bits (83), Expect = 0.005
Identities = 25/98 (25%), Positives = 27/98 (27%)
Frame = +3
Query: 807 PPXXAXXXPPQQXPPXXHAXKDHDRXTXXPTPHXHRPTAGRPPAPDTHQXATXXPXQTPX 986
PP PP H +H P P H P PP P H+ P P
Sbjct: 236 PPMHHEPGEHMPPPPMHHEPGEH----MPPPPMHHEPGEHMPPPPMHHEPGEHMP---PP 288
Query: 987 KTXHAXXXPXPPXPHXTTPXRQRSSXPRXRXPXXHAXP 1100
H PP P P P P H P
Sbjct: 289 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326
Score = 34.7 bits (76), Expect = 0.033
Identities = 19/69 (27%), Positives = 21/69 (30%)
Frame = +3
Query: 894 PTPHXHRPTAGRPPAPDTHQXATXXPXQTPXKTXHAXXXPXPPXPHXTTPXRQRSSXPRX 1073
P P H+P PP P H+ P P H PP P P P
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMP---PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 265
Query: 1074 RXPXXHAXP 1100
P H P
Sbjct: 266 HEPGEHMPP 274
Score = 34.3 bits (75), Expect = 0.043
Identities = 25/98 (25%), Positives = 27/98 (27%)
Frame = +3
Query: 807 PPXXAXXXPPQQXPPXXHAXKDHDRXTXXPTPHXHRPTAGRPPAPDTHQXATXXPXQTPX 986
PP PP H +H P P H P PP P H+ P P
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEH----MPPPPMHHEPGEHMPPPPMHHEPGEHMPPP-PM 264
Query: 987 KTXHAXXXPXPPXPHXTTPXRQRSSXPRXRXPXXHAXP 1100
P PP H P P P H P
Sbjct: 265 HHEPGEHMPPPPMHH--EPGEHMPPPPMHHEPGEHMPP 300
Score = 30.7 bits (66), Expect = 0.53
Identities = 20/75 (26%), Positives = 22/75 (29%)
Frame = +3
Query: 807 PPXXAXXXPPQQXPPXXHAXKDHDRXTXXPTPHXHRPTAGRPPAPDTHQXATXXPXQTPX 986
PP PP H +H P P H P PP P H+ P P
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEH----MPPPPMHHEPGEHMPPPPMHHEPGEHMPPP-PM 329
Query: 987 KTXHAXXXPXPPXPH 1031
P PP H
Sbjct: 330 HHEPGEHMPPPPFKH 344
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.099
Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 4/139 (2%)
Frame = +3
Query: 714 PXTRAXPPPXPXTQXXXXXXXXXXXXETXXRPPXXAXXXPPQQXPPXX--HAXKDHDRXT 887
P PPP T P + PP P A ++
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310
Query: 888 XXPTPHXHRPTAGRPPAPDTHQXATXXPXQTPXKTXHAXXXPXPPXPHXTTPXRQRSSXP 1067
P P R G+PP + ++ P P ++ A P PP P S P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 1068 R--XRXPXXHAXPXXTNPP 1118
+ P + +NPP
Sbjct: 371 STGRQPPPLSSSRAVSNPP 389
Score = 30.3 bits (65), Expect = 0.70
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +1
Query: 145 PRPXXKGAGDAGTAPPQRXKAHPNXXXNXPPXXPPXPXTXXQPAAXPXGAGPXPPXGXXX 324
P P + PP + P PP P P PA P A P PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP-AAPPLPPAAPAP 476
Query: 325 XPGP 336
P P
Sbjct: 477 PPAP 480
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/100 (22%), Positives = 27/100 (27%)
Frame = +3
Query: 723 RAXPPPXPXTQXXXXXXXXXXXXETXXRPPXXAXXXPPQQXPPXXHAXKDHDRXTXXPTP 902
R PPP P + + PP PP+ R P P
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP----PPRSNAAGSIPLPPQGRSAPPPPP 365
Query: 903 HXHRPTAGRPPAPDTHQXATXXPXQTPXKTXHAXXXPXPP 1022
P+ GR P P + A P P PP
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +1
Query: 181 TAPPQRXKAHPNXXXNXPPXXPPXPXTXXQPAAXPXGAG-PXPPXGXXXXPGPP 339
+APP + P P PP P + P A P AG P P P PP
Sbjct: 426 SAPPSLPPSAPPSLPMGAPAAPPLPPS--APIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 27.5 bits (58), Expect = 4.9
Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Frame = +1
Query: 187 PPQRXKAHP---NXXXNXPPXXPPXPXTXXQPAAXPXGAGPXPPXG-XXXXPGPPXDTPX 354
P +R + P N N PP P P + G+ P PP G P PP P
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPP-----PRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 355 TXXXAXQXPATAGXPHSTTPXGPXXXXPXK 444
T Q P + + P P P +
Sbjct: 372 T---GRQPPPLSSSRAVSNPPAPPPAIPGR 398
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/69 (26%), Positives = 19/69 (27%)
Frame = +1
Query: 232 PPXXPPXPXTXXQPAAXPXGAGPXPPXGXXXXPGPPXDTPXTXXXAXQXPATAGXPHSTT 411
PP P P + P A P P G P P P PA P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP-PAA 473
Query: 412 PXGPXXXXP 438
P P P
Sbjct: 474 PAPPPAPAP 482
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.70
Identities = 23/96 (23%), Positives = 26/96 (27%), Gaps = 6/96 (6%)
Frame = +1
Query: 151 PXXKGAGDAGTAPPQRXKAHPNXXXNXPPXX------PPXPXTXXQPAAXPXGAGPXPPX 312
P K + AP R P PP PP P P + P P
Sbjct: 995 PLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPK 1054
Query: 313 GXXXXPGPPXDTPXTXXXAXQXPATAGXPHSTTPXG 420
P P P PA +G P P G
Sbjct: 1055 SSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG 1090
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 338 GGPGXXXXPXGGXGPAPXGXAAGWXXVSGXGGXCGG 231
GGPG GG G P G G G G GG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 2.1
Identities = 23/93 (24%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Frame = +1
Query: 166 AGDAGTAPPQRXKAHPNXXXNXP-----PXXPPXPXTXXQPAAXPXGAGPXPPXGXXXXP 330
A + APP P N P P P + PA P P P
Sbjct: 1471 APSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVP 1530
Query: 331 GPPXDTPXTXXXAX--QXPATAGXPHSTTPXGP 423
P P A PA PH ++P P
Sbjct: 1531 SPAPPAPQHPSAAALSSAPADNSMPHRSSPYAP 1563
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +1
Query: 181 TAPPQRXKAHPNXXXNXPPXXPPXPXTXXQPAAXPXGAGP--XPPXGXXXXPGPPXDTP 351
+ PP R ++ + P PP P+A P AGP PP P P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 4.9
Identities = 21/69 (30%), Positives = 23/69 (33%)
Frame = +1
Query: 145 PRPXXKGAGDAGTAPPQRXKAHPNXXXNXPPXXPPXPXTXXQPAAXPXGAGPXPPXGXXX 324
PRP A +APP KA P PP P P P + P PP
Sbjct: 145 PRPSIPPPSPA-SAPPIPSKAPPIPSSLPPPAQPAAP--VKSPPSAPSLPSAVPPMPPKV 201
Query: 325 XPGPPXDTP 351
P P P
Sbjct: 202 PPPPLSQAP 210
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 237 TXPPXPGXXXPAXXXXXGXRPPPPXXXXRXTGPPXXHP 350
T P P P G PPPP GPP P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 235 PXXPPXPXTXXQPAAXPXGAGPXPPXGXXXXPGPPXDTP 351
P P P PA G P PP GPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 175 AGTAPPQRXKAHPNXXXNXPPXXPPXPXTXXQPAAXPXGAGPXPP 309
A TAP + + P P PP P PAA P P PP
Sbjct: 146 AATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQP----PFPP 186
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/54 (24%), Positives = 18/54 (33%)
Frame = +2
Query: 149 APSXKXRATPAPHRPSAXKXTPTXXPTPXHXPPXXRXPXXSXXXXXXXPAPXPP 310
AP+ + + + P+ P P PP P S P P PP
Sbjct: 142 APASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPP 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.305 0.128 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,202
Number of Sequences: 5004
Number of extensions: 30267
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 816730158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
- SilkBase 1999-2023 -