Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F06
         (1462 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    25   5.5  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   5.5  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    25   7.3  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   9.6  

>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 833 PTTTTTXXXRXKRPRPXDXXPNXTXPPANGRPPTG 937
           PTTTTT       P      P+   P     PPTG
Sbjct: 259 PTTTTTTDYTTAYPPTTSEPPSTPHPTDPHCPPTG 293


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 28/94 (29%), Positives = 31/94 (32%)
 Frame = +1

Query: 64  KGFRXXRGGXGXRGTQGXPXXXKSXXXPRPXXKGAGDAGTAPPQRXKAHPNXXXNXPPXX 243
           +G +  RGG G RG  G P    S   P       GD GT  P      P    +  P  
Sbjct: 115 RGPKGERGGMGDRGDPGLPG---SLGYPGE----KGDLGTPGP------PGYPGDVGPKG 161

Query: 244 PPXPXTXXQPAAXPXGAGPXPPXGXXXXPGPPXD 345
            P P     PA  P   G     G    PG   D
Sbjct: 162 EPGP---KGPAGHPGAPGRPGVDGVKGLPGLKGD 192


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = +1

Query: 187 PPQRXKAHPNXXXNXPPXXPPXPXTXXQPAAXPXGAGPXPPXGXXXXPGPPXDTP 351
           PP+   + P    N PP     P     P       GP PP      P PP   P
Sbjct: 71  PPKPNISIPPPTMNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRP-PPMMVP 124


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 19/92 (20%), Positives = 22/92 (23%), Gaps = 2/92 (2%)
 Frame = +1

Query: 145 PRPXXKGAGDAGTAPPQRXKAHPNXXXNXPPXXPPXPXTXXQPAAXPXGAGPXP--PXGX 318
           PRP        G   P R +  P       P   P P +       P    P P  P   
Sbjct: 212 PRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNP 271

Query: 319 XXXPGPPXDTPXTXXXAXQXPATAGXPHSTTP 414
              P P      +           G P    P
Sbjct: 272 MGGPRPQISPQNSNLSGGMPSGMVGPPRPPMP 303


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.305    0.128    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,676
Number of Sequences: 2352
Number of extensions: 11794
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 170279505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)