Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F05
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   128   1e-30
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   124   2e-29

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  128 bits (308), Expect = 1e-30
 Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
 Frame = +1

Query: 79  DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 258
           DI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS+
Sbjct: 4   DIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63

Query: 259 SRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXX 432
           S++A     K  + EG   V+VGTVT+D RL  +PK++VAAL  T+              
Sbjct: 64  SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVL 123

Query: 433 TFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPG 534
           T DQLALRAPTG  TVL++G+++AREA RHFG G
Sbjct: 124 TLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG 157


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  124 bits (298), Expect = 2e-29
 Identities = 63/154 (40%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
 Frame = +1

Query: 79  DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 258
           DI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS+
Sbjct: 4   DIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63

Query: 259 SRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXX 432
           S++A     K  + +    VVVGTVT+D R+  +PK+++AAL  T+              
Sbjct: 64  SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVL 123

Query: 433 TFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPG 534
           T DQLALRAPTG  TVLV+G+++AREA RHFG G
Sbjct: 124 TLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,112
Number of Sequences: 5004
Number of extensions: 53459
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)