Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_F05
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 134 7e-32
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 132 3e-31
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 120 1e-27
01_06_0579 + 30379243-30379617 29 3.6
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 4.8
01_03_0053 + 12050631-12051620 28 8.4
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 134 bits (325), Expect = 7e-32
Identities = 70/151 (46%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Frame = +1
Query: 97 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 276
++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 277 M--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTF 438
M K P R + IAV+VGTVT+D R+Y++P M VAAL TE TF
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTF 130
Query: 439 DQLALRAPTGKKTVLVQGQRNAREAVRHFGP 531
DQLALRAP G+ TVL++G +NAREAV+HFGP
Sbjct: 131 DQLALRAPLGQNTVLLRGPKNAREAVKHFGP 161
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P S+TKPYVR+KG +
Sbjct: 162 APGVPHSNTKPYVRSKGRK 180
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 132 bits (319), Expect = 3e-31
Identities = 68/144 (47%), Positives = 90/144 (62%)
Frame = +1
Query: 97 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 276
++K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 277 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLALR 456
M+ E IAV+VGTVT+D R+ +IPKM V AL TE TFDQLALR
Sbjct: 71 MEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129
Query: 457 APTGKKTVLVQGQRNAREAVRHFG 528
AP G+ TVL++G +NAREAVRHFG
Sbjct: 130 APLGENTVLLRGPKNAREAVRHFG 153
Score = 37.1 bits (82), Expect = 0.018
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P SHTKPYVR+KG +
Sbjct: 155 APGVPHSHTKPYVRSKGRK 173
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 120 bits (290), Expect = 1e-27
Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 17/162 (10%)
Frame = +1
Query: 97 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 276
++K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 277 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLALR 456
M+ +E IAV+VGTVT+D R+Y++P M VAAL TE TFDQLALR
Sbjct: 71 MEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALR 128
Query: 457 APTGKKT-----------------VLVQGQRNAREAVRHFGP 531
AP G+ T VL++G +NAREAV+HFGP
Sbjct: 129 APLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGP 170
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P S+TKPYVR+KG +
Sbjct: 171 APGVPHSNTKPYVRSKGRK 189
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 349 CTVSRHL*LSPLPRQSNPHELASS 278
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 320 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 216
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>01_03_0053 + 12050631-12051620
Length = 329
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 574 ANIGFSVRARCSWSQGQSDALPHEHFADLVPVLSSCQS 461
A GF+V A G S+ L H D+VPVL C++
Sbjct: 83 AKAGFAVAAVDHQGHGFSEGL-QGHIPDIVPVLEDCEA 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,079,506
Number of Sequences: 37544
Number of extensions: 377364
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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