Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F05
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              132   5e-31
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   4.9  
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  132 bits (318), Expect = 5e-31
 Identities = 68/150 (45%), Positives = 89/150 (59%)
 Frame = +1

Query: 79  DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 258
           DI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S+
Sbjct: 111 DIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSL 170

Query: 259 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTF 438
           +RL R MK    +  I VVVG++T+D R++++P + + AL  +E              TF
Sbjct: 171 ARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTF 230

Query: 439 DQLALRAPTGKKTVLVQGQRNAREAVRHFG 528
           DQLALRAP G+ TVL+QG R AREA RH G
Sbjct: 231 DQLALRAPLGQNTVLLQGPRKAREAERHMG 260


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 386 VT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 291
           +T R  T++FGIL  L +     TT  IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 439  DQLALRAPTGKKTVLVQGQRNAREAVRHFGPGSRSTALSH*TL--CSHQGT*KSKPSRRA 612
            D +    P  +K  L  G     + +RH  PGSR   L+H TL      GT +++ + R 
Sbjct: 908  DTIRHGTPGSRKVQLSHG--TLHDTIRHGTPGSRKVQLAHGTLHDTIRHGTTRTRHTTRY 965

Query: 613  N 615
            N
Sbjct: 966  N 966


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,051,963
Number of Sequences: 59808
Number of extensions: 432715
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)