Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_F05
(866 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 153 1e-36
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 153 1e-36
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 153 1e-36
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 153 1e-36
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 151 4e-36
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 129 1e-29
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 30 9.5
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 30 9.5
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 30 9.5
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 153 bits (370), Expect = 1e-36
Identities = 80/155 (51%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Frame = +1
Query: 79 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 258
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 259 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTF 438
SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT + TF
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTF 123
Query: 439 DQLALRAPTGKKTVLVQGQRNAREAVRHFG--PGS 537
DQLAL +P G TVL+ G R RE RHFG PG+
Sbjct: 124 DQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 158
Score = 37.1 bits (82), Expect = 0.083
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P SHTKPYVR+KG +
Sbjct: 155 APGTPHSHTKPYVRSKGRK 173
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 153 bits (370), Expect = 1e-36
Identities = 80/155 (51%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Frame = +1
Query: 79 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 258
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 259 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTF 438
SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT + TF
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTF 123
Query: 439 DQLALRAPTGKKTVLVQGQRNAREAVRHFG--PGS 537
DQLAL +P G TVL+ G R RE RHFG PG+
Sbjct: 124 DQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 158
Score = 37.1 bits (82), Expect = 0.083
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P SHTKPYVR+KG +
Sbjct: 155 APGTPHSHTKPYVRSKGRK 173
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 153 bits (370), Expect = 1e-36
Identities = 80/155 (51%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Frame = +1
Query: 79 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 258
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 259 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTF 438
SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT + TF
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTF 123
Query: 439 DQLALRAPTGKKTVLVQGQRNAREAVRHFG--PGS 537
DQLAL +P G TVL+ G R RE RHFG PG+
Sbjct: 124 DQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 158
Score = 37.1 bits (82), Expect = 0.083
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P SHTKPYVR+KG +
Sbjct: 155 APGTPHSHTKPYVRSKGRK 173
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 153 bits (370), Expect = 1e-36
Identities = 80/155 (51%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Frame = +1
Query: 79 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 258
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 259 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTF 438
SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT + TF
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTF 123
Query: 439 DQLALRAPTGKKTVLVQGQRNAREAVRHFG--PGS 537
DQLAL +P G TVL+ G R RE RHFG PG+
Sbjct: 124 DQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 158
Score = 37.1 bits (82), Expect = 0.083
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P SHTKPYVR+KG +
Sbjct: 155 APGTPHSHTKPYVRSKGRK 173
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 151 bits (365), Expect = 4e-36
Identities = 79/155 (50%), Positives = 95/155 (61%), Gaps = 2/155 (1%)
Frame = +1
Query: 79 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 258
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+ +
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLCL 63
Query: 259 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTF 438
SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT + TF
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTF 123
Query: 439 DQLALRAPTGKKTVLVQGQRNAREAVRHFG--PGS 537
DQLAL +P G TVL+ G R RE RHFG PG+
Sbjct: 124 DQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 158
Score = 37.1 bits (82), Expect = 0.083
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P SHTKPYVR+KG +
Sbjct: 155 APGTPHSHTKPYVRSKGRK 173
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 129 bits (312), Expect = 1e-29
Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Frame = +1
Query: 184 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 363
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 364 TVAALHVTEKXXXXXXXXXXXXXTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG--PGS 537
V AL VT + TFDQLAL +P G TVL+ G R RE RHFG PG+
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 135
Score = 37.1 bits (82), Expect = 0.083
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P SHTKPYVR+KG +
Sbjct: 132 APGTPHSHTKPYVRSKGRK 150
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.3 bits (65), Expect = 9.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 396 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 274
+F N+KSS +R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.3 bits (65), Expect = 9.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 396 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 274
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.3 bits (65), Expect = 9.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 396 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 274
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,712,172
Number of Sequences: 237096
Number of extensions: 2121596
Number of successful extensions: 7916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7916
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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