Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_F05
(866 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 133 1e-31
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 129 3e-30
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 100 1e-21
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.75
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof... 29 3.0
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 29 4.0
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof... 29 4.0
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 29 4.0
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 7.0
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 7.0
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu... 28 7.0
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 9.3
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 133 bits (322), Expect = 1e-31
Identities = 66/144 (45%), Positives = 93/144 (64%)
Frame = +1
Query: 100 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 279
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 280 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLALRA 459
+E IAV+VGT+T+D+R+++IP M V AL TE+ TFDQLALRA
Sbjct: 72 TG--KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 460 PTGKKTVLVQGQRNAREAVRHFGP 531
P G+ TVL++G +N+REAV+HFGP
Sbjct: 130 PLGQNTVLLRGPKNSREAVKHFGP 153
Score = 35.1 bits (77), Expect = 0.061
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P SH+KPYVR KG +
Sbjct: 154 APGVPHSHSKPYVRAKGRK 172
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 129 bits (311), Expect = 3e-30
Identities = 63/144 (43%), Positives = 92/144 (63%)
Frame = +1
Query: 100 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 279
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 280 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLALRA 459
++ IAV+VGT+T+D+R+++IP M V AL TE+ TFDQLALRA
Sbjct: 72 TG--KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 460 PTGKKTVLVQGQRNAREAVRHFGP 531
P G+ TVL++G +N+REAV+HFGP
Sbjct: 130 PLGQNTVLLRGPKNSREAVKHFGP 153
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKGHE 589
APG P S+TKPYVR KG +
Sbjct: 154 APGVPHSNTKPYVRHKGRK 172
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 100 bits (239), Expect = 1e-21
Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Frame = +1
Query: 226 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKXXXX 405
MS++N+ P+S+SRL R+M ++G IAV+VGTVT+DVR+ +P +TV AL TE
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58
Query: 406 XXXXXXXXXTFDQLALRAPT-GKKTVLVQGQRNAREAVRHFGP 531
TFDQLAL PT + TVL++G +N REAV+HFGP
Sbjct: 59 IHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGP 101
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 533 APGAPRSHTKPYVRTKG 583
APG P SHTKPYVR G
Sbjct: 102 APGVPHSHTKPYVRQTG 118
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 529 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 437
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 564
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 353 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSR 216
+LY LTS + VPT T + S + F RA D I ++ R
Sbjct: 347 VLYFLTSSIVVPTKTGERASPIDDFCVRAASDLTFSFEAIPSLRER 392
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 353 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 258
+LY LTS + VPT T + S + F RA D
Sbjct: 377 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 408
>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 301
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 356 GILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 258
G+LY LTS + V T T K S V F RA D
Sbjct: 101 GVLYFLTSIIVVLTKTGEKGSPVDNFCLRAASD 133
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 353 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 258
+LY LTS + VPT T + S + F RA D
Sbjct: 440 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 471
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 436 FDQLALRAPTGKKTVLVQGQRNAREAV 516
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 436 FDQLALRAPTGKKTVLVQGQRNAREAV 516
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At1g80010.1 68414.m09362 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 696
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 610 HDDWACFFMSLGANIGFSVRARCSWSQGQS 521
+DD F+ S +GF++R + SW++ S
Sbjct: 75 YDDAYSFYNSYARELGFAIRVKSSWTKRNS 104
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 199 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 306
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,220,763
Number of Sequences: 28952
Number of extensions: 296587
Number of successful extensions: 718
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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