Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F04
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical ...    45   8e-05
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    30   2.3  

>AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical
           protein C34B2.10 protein.
          Length = 105

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +3

Query: 162 IPTHIDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVY-ILG 299
           + +HID+ GQ  AE+ Y+ I+T+  I+GF+ G+  QQ S +++ +LG
Sbjct: 15  LSSHIDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLG 61


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 345 WPWRNSKNGSKQKSGTQEYTLTARIAELYNPIQNQL 238
           +PW N+     Q SG   +  +A+  E YNP+   L
Sbjct: 7   YPWNNNYYSHGQSSGNDSWAPSAQSQEQYNPVYPSL 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,265
Number of Sequences: 27780
Number of extensions: 217448
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)