Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F02
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.6  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   2.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   4.5  

>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 491 KTMRARCAATERMSGWFSTTAHILYSK 571
           KTM AR  ATE  S +FS +A  L SK
Sbjct: 505 KTMLARAVATESRSVFFSISASSLTSK 531


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 491 KTMRARCAATERMSGWFSTTAHILYSKH 574
           KTM AR  ATE  + +FS +A  L SK+
Sbjct: 425 KTMLARAVATEAKATFFSISASSLTSKY 452


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 512 HIWLSLSSFQSFHLNSKFPVGSFFPICKXKV*GLSFASFG 393
           HIWL +     F+ NSK    +F P     V G S   FG
Sbjct: 241 HIWL-IKERHYFNQNSKLRCAAFHPTSNLLVVGFSSGLFG 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,425
Number of Sequences: 5004
Number of extensions: 36075
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)